Macrobrachium rosenbergii (giant freshwater prawn): 136841537
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Entry
136841537 CDS
T10429
Symbol
Xpd
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03022
Basal transcription factors
mrj03420
Nucleotide excision repair
Brite
Enzymes [BR:
mrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
136841537 (Xpd)
Transcription machinery [BR:
mrj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
136841537 (Xpd)
Chromosome and associated proteins [BR:
mrj03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
136841537 (Xpd)
DNA repair and recombination proteins [BR:
mrj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
136841537 (Xpd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136841537
NCBI-ProteinID:
XP_066964607
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All DBs
Position
9:20494559..20535248
Genome browser
AA seq
756 aa
AA seq
DB search
MILDVDGMPVYFPYEFIYPEQYSYMLDLKRALDAKGHCLLEMPSGTGKTITLLSLIVSYL
RAFPQNLTKLIYCSRTIPEIEKVIEELRKLKAYIEKETGAAPNITGLALASRKHLCINPE
VNKAREGKLIDSGCHALTASYVRSRAQRDDTIPQCDVFEKFDLHGKEFPLPAGCYNLDDL
REYGHQKGWCPYFLARHAVLQANIVVYSYHYLLDPKISEIVSKEMKSEACVVFDEAHNID
NICVDSMSISINRKVLDKAKNCISTLHDHIQRIKESDSNRLQDEYNRLVAGLRQAARSED
VVANPILPNDILEENIPGTIRTSRLPISFMRLKYFLKHRLTVTVSLFKNSSSLFYNRKNE
KFIHTHCSRFCSERLSSIVRSLELTHGWKRLLFCPMAXFTLVIXPIYTFTVIIEPFEDKA
PNIPNPILYLRCLDSSLAIKPVFTKFQTVVITSGTLSPLDMYPKILDFHPVIQNSFTMTL
ARSCILPMIVTKGNDQVAISSKFESRDDPAVVRNYGKLLVEMATIIPDGMVCFFTSYLYL
ENVVATWYDHGIINDLQRHKLVFIETQDDAETSLALLNYMKACDKGRGGVLLAVARGKVS
EGIDFDHHYGRCVIMMGIPFMYTQSRILKARLEYLRSQFNIRENDFLTFDAMRHAAQCVG
RVMRGKTDYGIMLFADKRFFRADKRNKLPRWIQEYLTDHASDLSTEEAVQMIRPWLRQMA
QPFTRDDQLGVSLLTLEQLNSLENVEKVQRRAQQTM
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgatattggacgttgatggaatgccagtctactttccctatgaattcatttacccagag
cagtactcctatatgcttgatctgaagagggctcttgatgcaaagggtcattgtttacta
gagatgccttcaggaactggcaaaacaataacactgctgtcattgatcgtctcatatctt
cgagctttcccacaaaatttgacaaaacttatttattgttcacgaacaataccagagatt
gaaaaggttatagaagaacttcgtaaattgaaagcttacattgaaaaagaaactggtgcg
gcacctaacataactggcttggctcttgcatccagaaagcacctgtgcattaatccagag
gtgaataaagctcgtgaaggcaagctgattgatagcggttgtcatgccctcacagcatca
tacgtgagatcaagggcacagagagatgacacaattccacagtgtgatgtttttgaaaaa
tttgatcttcacggaaaagaattccctctccctgctggatgctacaatttagatgacctt
cgggaatatggtcaccaaaaaggctggtgcccatatttcctagcacgacatgcagttttg
caggcaaatatcgtggtatacagctaccattatctattagatccaaagatttctgaaatt
gtatccaaagaaatgaagagtgaagcctgtgttgtgtttgatgaagcgcataatattgat
aacatttgtgtagactccatgagtatcagtatcaacagaaaggttttagacaaagccaaa
aattgcatatccactctacatgatcacattcagagaataaaggaatctgatagcaatcgt
ttacaagatgagtacaacagattagttgcaggccttcgtcaggcagcaagaagtgaagat
gtagtagctaatccaattcttcctaatgatattttagaagaaaatatacctggtacaatc
agaacatctcgactccccatatcattcatgagactaaagtatttcctaaaacatcgactt
actgtaaccgtcagtttgttcaagaactccagcagtttattctataacagaaaaaatgaa
aaattcatacacactcattgttccaggttttgctcagaacgactgtcttctattgtaagg
tcactagagctaacacatggttggaaaaggctcctgttttgcccaatggccnnttttact
ttggtcatctgacctatctacaccttcacagtgataattgaaccttttgaggataaagca
cctaatattccaaatccaatattgtatttgagatgccttgattcttcccttgccatcaaa
ccagttttcactaagttccagactgttgtcatcacatctggaacattgtcacctttggac
atgtatcccaaaattttagatttccatcctgtcatacagaattctttcaccatgactttg
gctcgctcatgcatccttccaatgattgtaactaagggtaatgatcaagttgccatttcc
tcaaaatttgagtcacgtgatgatcctgctgttgtaaggaattatggaaaattacttgtt
gaaatggcaaccataattccggatggaatggtgtgcttctttacctcctatttgtatttg
gaaaacgttgtggcaacatggtatgatcatggaatcataaatgatttgcagcgccataaa
ctggtattcattgaaactcaagatgatgcagaaacatctcttgcattgttaaattacatg
aaggcctgtgataaaggtagaggaggcgttctccttgccgttgcaagagggaaggtctcg
gaaggaattgattttgaccatcactatggacgctgtgtaattatgatggggataccattt
atgtatacgcagagtcgaattctaaaagctcgcttggagtacctgcgtagccagtttaat
attcgagaaaatgattttttgacctttgatgccatgagacatgcagcacagtgcgtaggg
cgagttatgagagggaagacagactatggaataatgttatttgctgataagcgtttcttc
agagctgacaaacggaataaactacctcgttggattcaagaataccttactgatcatgcc
agtgatctttcaacagaagaagcagtacagatgatcagaccatggctgcggcaaatggct
cagccattcactcgtgatgatcagcttggagtgtcccttcttaccttagaacagctgaac
tcattagaaaatgtcgagaaagttcaaaggagagcacagcagacaatgtga
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