Macrobrachium rosenbergii (giant freshwater prawn): 136843244
Help
Entry
136843244 CDS
T10429
Name
(RefSeq) patched-related protein 18-like
KO
K12385
Niemann-Pick C1 protein
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
mrj04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
136843244
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
136843244
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
mrj02000
]
136843244
Transporters [BR:
mrj02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
136843244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
MMPL
ACR_tran
DUF3112
NPC1_MLD
Albumin_I
Motif
Other DBs
NCBI-GeneID:
136843244
NCBI-ProteinID:
XP_066967457
LinkDB
All DBs
Position
11:complement(24298713..24345116)
Genome browser
AA seq
1095 aa
AA seq
DB search
MRLESILCLQYIKSMKSKTFFPKPAGGGGGGGVGGGKGEERPGGRGEEACPRIGEEKSNN
TKERSTNCLFKASMHVVSLVEKGCGNWGAQVSSHPVKVSCICLLLVSLFSVGLFKINQEL
RPYRLWISHQSEFAKVNEWKTENFPNEYRQHVALWEAENILTASAIQQIWKLHRKILDIS
VTVKGETFKWDDICTRVPSLLSNENTSQESQTSDYDYTDKLNITWSPLNWTSYDWLEITN
TTDMWNDYDYGEQWANESPTNIYLSAEEAQMVEAVSQNTIQTVQEDYSLILPRTDYCDLL
ESKPSICYETSLLEIWGYNNDAIIKLTDEKVVKDVNEAFMSNVFGYPTKFDKYLGGIQRG
QNNTIIAARATMHTWITKIQKNKTNVVDLGTGDIVDEGGMAWEMALVEEARSFVAPGMRL
HIHAAHSFGKVSAETIKNDIKWVVCGWMVLVIYVLVTLGCPGPAIVGLVCIAAAVAATFG
LCSIIGVPYGPINSVLPVLLIALGVDDMYVIVASWKAAGNKDSLKSKARDALRHAGVAVT
VTSLTDAVAFLIGATTQVPALCWFCIYAAIGVFIVYCLQCTVFVAALAINQKYQDSKKPN
CYKLPRITNWSVSGAMKGYATCLVKTPAQVAIIIVATLMLGVGAWGAISLRQEFSPIWFL
PRSSYLYNWFTFMNSHFPNDGEPGSVYFSNVSLPDEMPALRKLAASLRDSPYITQVNAWF
NIFDVYMLEYRKYIQVNLTSETMHDVLSLFLNSKSGAQFKNHFLFDGDLHCNEPAPQFKA
FKIDFTYARLKQRSDQQAAMNSIRKIVAAANISEYHAVWAHVYSQWETDSTLAAELWRNL
SVVVVVVATMTLLLLAAFRAAFLVLLSVLATLLDVMALMHICGLTIDTVSCIALVLAIGI
CVDYSAHVAHAFLTVTGSKKERVLDTIAQVGPAVLHGGTSTLVAFLLLAPADSHLFLSFF
QIFTSVSAFGLFHGLVLLPVLLSLIGPEPYPHHLEQCPSLMNVTTKIDKDPKETCYNKTP
ADESLKLQNTKNDHTQRNSIDKKTIAKDVQRLGALNHKRSKSSSRTMDPEHQSAAITESE
KSLQNSKQVAKRLTM
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgaggcttgagagcattctatgcctccagtacatcaagagcatgaaaagtaaaacattc
tttccgaaacccgctggaggaggaggtggagggggagtgggcgggggcaagggagaagaa
aggccaggaggaaggggagaagaagcatgtccaagaatcggagaggaaaaatctaataac
actaaagaaagatcgacaaactgcctgttcaaagcaagcatgcatgtcgtaagcctggtt
gaaaagggttgtggaaactggggagcacaagtatcctctcatccagtgaaggtatcctgc
atctgcctcctcctggtctcactcttctctgttgggctgttcaagatcaaccaagaatta
cgtccatataggttatggatctctcaccaatctgaatttgcaaaggtaaacgaatggaaa
actgagaacttcccaaatgagtatcgtcagcatgttgctctgtgggaggcagagaatatc
ctaacagcaagcgcaatccaacaaatatggaagcttcacaggaaaatattggacatatca
gtcacagtgaagggagaaacattcaagtgggatgatatatgtactcgtgtgccatcttta
cttagtaatgaaaatacttctcaggaatcccaaacaagtgattatgattatacagacaag
ttaaatattacttggtcacccttaaactggaccagttatgactggcttgaaattacaaac
acaacagacatgtggaatgactatgattatggagaacaatgggcgaatgaatccccaacc
aacatttacttgtctgcagaggaagcacagatggtggaagctgtatctcaaaatacaata
caaaccgtgcaagaggattacagcctaatcctaccaagaactgattactgtgacctgctt
gaatcaaagccaagtatctgctatgagacaagccttttggaaatttggggttataacaat
gatgccatcattaagctcacagacgaaaaagttgtgaaggacgtcaacgaagcttttatg
agcaatgtctttggctatccaaccaagtttgataaataccttgggggtatccagcggggt
cagaataacaccatcatagcagccagagcgacaatgcatacttggataaccaaaatacaa
aaaaacaagacaaatgtagtagaccttggaactggagatattgtggatgagggagggatg
gcctgggaaatggcacttgtagaagaggcaaggtcatttgtggcaccaggtatgagatta
catatccatgctgctcacagctttggaaaagtcagtgctgaaactataaaaaatgatata
aagtgggtagtgtgtggatggatggtgctagtaatctatgtactagttactcttggctgt
cctgggcctgccattgtgggccttgtatgtattgctgcagctgttgcagcaacttttggt
ttgtgctcaattattggggtaccatatggtccaatcaactcagtactgcctgtattactc
atagcccttggagttgatgatatgtatgttatagttgcatcctggaaagctgctggtaac
aaagactccttaaaatcaaaagcaagagatgcactaaggcatgcaggtgtagctgttact
gtcacatcattaacagatgctgtggccttcttgattggagcaactacacaggttcctgct
ctttgctggttttgtatctatgctgccattggggtgtttattgtttactgtttgcagtgt
actgtatttgtagcagcacttgccattaaccaaaaataccaagattctaagaaacctaac
tgttacaaactcccaagaattacaaactggtcagtttctggggcaatgaaagggtatgcc
acatgtttagtaaaaaccccagcacaagtggcaataataatagtagccacccttatgtta
ggagtgggtgcgtggggtgcaataagccttcgccaagaatttagtcctatttggttttta
ccaagatcctcttatttgtacaattggtttacattcatgaattcccatttcccaaatgat
ggtgagccgggaagtgtgtatttctcaaatgtctcactaccagatgaaatgccagcatta
cggaaattagcagcatccctaagggactcaccctacattactcaagttaatgcatggttt
aacatttttgatgtttacatgctagaatataggaagtacatccaggttaatttgacatct
gaaacaatgcatgatgtcctcagcctctttttaaattctaagagtggtgcacaattcaag
aatcattttctgtttgatggagacttacactgcaatgagcctgctcctcaatttaaagct
ttcaaaattgactttacatatgctagactaaagcaaagatcagaccaacaagcagcaatg
aacagtattagaaaaattgtggctgctgcaaatatatctgagtatcatgcagtatgggca
catgtatacagtcagtgggaaacagactcaacattagcagctgaactctggcggaatttg
agtgtagtagtagttgttgttgcaaccatgactctcctcctactggcagcatttcgagct
gcatttctagtcttgctaagtgtacttgccacacttttggatgtgatggcactcatgcat
atctgtggtcttactattgatacagtcagctgcatagctttagtattagcaataggaatt
tgtgttgattattcagctcatgtagcccatgctttcctcactgtgacaggaagcaagaaa
gaacgtgttctagataccattgcacaagtaggacctgcagtattacatggaggcacttca
acacttgttgccttcctcctccttgcacctgctgattcacatctgtttttgtctttcttc
caaatctttacaagtgtgtcagcttttggcctcttccatgggcttgttcttttgccggtt
ctgttgtcactcataggtcctgagccatacccccaccaccttgagcaatgcccttccttg
atgaatgttacaacaaaaatagacaaggacccaaaagagacatgctacaataaaactcca
gctgatgaatctttgaaattacaaaatacaaaaaatgatcatacacaaagaaatagcatc
gataaaaaaacaatagccaaagatgtacaaaggcttggagcactaaaccacaaaaggtca
aagagctcctccagaacaatggaccctgagcaccagtctgcagcaataacagaatcggaa
aagtctttgcaaaatagtaaacaagtagcaaaaaggttaactatgtga
DBGET
integrated database retrieval system
