Macrobrachium rosenbergii (giant freshwater prawn): 136843679
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Entry
136843679 CDS
T10429
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03013
Nucleocytoplasmic transport
mrj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
136843679 (Upf1)
03015 mRNA surveillance pathway
136843679 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrj03019
]
136843679 (Upf1)
Enzymes [BR:
mrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
136843679 (Upf1)
5.6.2.5 RNA 5'-3' helicase
136843679 (Upf1)
Messenger RNA biogenesis [BR:
mrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
136843679 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
136843679 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NAT10_TcmA_helicase
ATPase
NPHP3_N
AAA_22
AAA_16
nSTAND3
SRP54
nSTAND_NTPase5
AAA_32
AAA_7
AAA_5
PhoH
Motif
Other DBs
NCBI-GeneID:
136843679
NCBI-ProteinID:
XP_066968342
LinkDB
All DBs
Position
12:complement(57608914..57677832)
Genome browser
AA seq
1139 aa
AA seq
DB search
MSVDAYGPSSSQSLTFYDTEEATADLLGADTQGSEYEFNLTLGSQTQTQGGGGAGDHLDK
TQASQSQVTVNGDAVEAEVEKATEALGDLQFEEEDEETAFYAKELPDWACRYCGIHDPAS
VVMCNVCHKWFCNGRGNTSGSHIINHLVRAKHKEVSLHKDGLVRDTVLECYACAVKNVFV
LGFIPAKAESVVVLLCRQPCAAQSSLRDMNWDPEQWKPLISDRALLPWLVRVPSEAEQLR
ARQITAQQINKLEELWKENASATFDDLERPGVDEEPQQVCLRYEDGFQYQNIFGPLVKLE
ADYDKKLKESQTQDKIEVRWDIGLNKKICAYFTLAKTDGDMRLMHGDELRLRYLGDLHKP
WSGVGHVIKIPDNFGEEVGIELKSNVGVPTDCRDKFVVDFVWKSTSFDRMQAALRKFAVD
DSSVSPYIYHRLLGHVEVDELIFRHIHLPKQLSAPNLPTLNNSQQYALKHALQRPLSLIQ
GPPGTGKTVTSATIVYQLVKQTGGTVLVCAPSNTAVDQLTEKIHKTGLKVVRLCAKSREA
IDSPVSFLALHNQIRNLEDNGELQKLQQLKEETGELSSADEKRFRMLKKQAEKTLLEAAD
VICCTCVGAGDPRLARLKFHSILIDESMQATEPECMVPVVLGAKQVILVGDHCQLGPVVM
CKKASRAGLSQSLFERLVVLGIRPFRLTVQYRMHPQLAQFPSNFFYEGSLQNGVVDADRT
MKGVSFPWPQLDKPQFFYVTSGQEEIAGSGTSYLNRTEASSVEKLVTRFLNSGVKPEQIG
VITPYEGQRAYLVQYMQYQGPLNQKLYQRLEVASVDAFQGREKDLIIMSCVRSNEHQGIG
FLSDPRRLNVALTRARYGIIIVGNPKVLSKQGLWNHLLHHFKEKKVLVEGPLNNLKESMM
QFSKPKRLINATNPGSHFMNTAMYDAREAMVPGSMYDRSSHINGTMPPPSQCFRGPQYDM
YGRAHDAMDYISADHSQPGLSNLPVPVGMFMNMAHVPPRFYQQHQQALAQARGGRGGGRG
GRMGNRKPNKNAGGAGALQLSQPFSQDPTTQSYSQPGLTQGHLSQGMPGPGLSGLSQGLS
QAELSQDSYMVDQFQSQTDGLLSQDSTYQGDRAFFTPASQTHHFSQPALMAETDKILWL
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacgcctacggccccagcagctcccagagcctgactttttacgacacggag
gaagccaccgccgacctcctcggggctgacactcagggctccgagtacgagttcaacctc
accctgggcagtcagacccagacccaggggggtggaggggcaggcgaccacctggacaag
acgcaggcttcgcaaagccaggtcacagtgaatggagatgctgttgaagctgaggtagaa
aaagccactgaagctcttggtgatttgcagtttgaggaagaggatgaggagactgctttt
tatgctaaggaattgccggactgggcttgtcgctattgtggcattcatgatccagcctct
gttgttatgtgcaatgtttgccataaatggttctgtaatggaagggggaatacatctggt
tcccacatcataaaccatcttgtccgagcaaagcataaggaggttagtcttcacaaggat
ggattggttagagacactgttctggagtgctatgcttgtgctgtcaaaaatgtttttgtg
ctgggctttatacccgctaaagctgaatctgtggtggtcctcttatgtcgccaaccatgt
gctgcacagagttctctgcgtgatatgaactgggatccagagcagtggaaacctctgatt
agtgatcgtgctctgctgccttggcttgttcgtgtaccctcagaagcagaacagctgcgg
gctagacaaattacagcccagcagatcaacaagttggaagagttgtggaaagagaatgct
tcagcaacttttgatgacctggaaagaccaggtgtagatgaagaaccccagcaagtttgc
cttagatatgaagatggtttccagtatcagaatatttttggacctctagtaaaattagaa
gcagattatgacaagaaattgaaggaatcacaaacacaagataaaattgaagtgcgttgg
gacattgggttgaacaagaaaatttgtgcctattttactcttgctaaaactgatggagat
atgcgcctgatgcatggagatgagctgcgtctccgttatctaggggacctccataaacct
tggtctggggtagggcatgtgatcaagatccctgataattttggggaggaggttgggatt
gaattgaaatctaatgttggtgtgccaactgactgccgggataagtttgttgttgacttt
gtatggaaatcgacaagttttgataggatgcaggctgcattgaggaagtttgctgttgat
gattcttcagtctctccttacatttaccatcggctgttgggccacgtcgaggttgacgag
ttgatctttcgtcatattcaccttccaaagcagctgtctgctcctaaccttcctacactg
aataattctcagcaatatgccctgaagcatgccttacaacgtcccctgtctttgatccaa
ggtccaccaggaactggcaagactgttacatcagcaactattgtgtatcagctggtcaaa
cagactggtggcacagttcttgtatgcgctccatccaacactgccgttgaccaactcaca
gagaaaatacacaaaactggactcaaggttgtgcgcttgtgtgccaaatcccgtgaagcc
attgactcgccagtatcatttttggccttgcataatcagatacgcaacctggaggataat
ggagagctacagaaacttcagcaattaaaagaggaaactggagagttatcatctgctgat
gaaaaaaggttccggatgctgaagaagcaggcagaaaagacattgttggaggcagcagat
gtgatctgctgcacatgtgttggtgctggtgatcctcgtcttgctcgtttgaaattccac
tccatcctaatagacgagtccatgcaggccacagaacctgagtgcatggtccctgttgtt
ctaggggccaagcaggtcattttggtgggtgatcattgccagttgggaccagttgttatg
tgcaaaaaagcatctcgagcagggctttctcagtctctttttgaacgtttggttgtattg
ggtatccggccattccgtctcaccgtccaatatcgcatgcatccccaactcgcacaattc
ccttcaaatttcttctatgaaggatctctacaaaatggagtagtagatgctgatcgtacc
atgaaaggagtaagtttcccatggcctcaattagacaaaccccagttcttctatgtcact
tctggccaagaagaaatagcaggttcaggcacatcatacttgaaccgaactgaagcttca
agtgtagagaagttggttacccggtttctcaattctggtgtgaagcctgagcagataggt
gttatcacaccttatgaagggcagagagcttatttggtacagtatatgcagtatcaagga
ccacttaaccagaaattgtatcaacggctggaagttgccagtgtggatgccttccaaggc
cgtgagaaggatttgattattatgtcttgtgtgcgttccaatgaacaccagggaattggg
tttctctcagatcctcgacgtttgaatgttgctctgacacgcgctcgatatggtattatt
attgttggaaacccaaaagtactatctaagcaaggattgtggaatcatttgctacatcat
ttcaaggagaagaaggttttggttgaagggcctctcaacaatctcaaagagtcgatgatg
cagttcagcaagcctaaaagactgatcaacgcaaccaatccaggatcacacttcatgaat
acagcaatgtatgatgcacgggaagccatggtgccaggatctatgtacgatcgttcaagt
cacatcaatggaactatgcccccaccatctcagtgtttcagaggacctcagtatgacatg
tatggacgagcacatgatgcaatggactacatctcggctgatcattctcaaccaggacta
agtaatttgccagtgcctgttggaatgtttatgaacatggcccacgtgccaccccgtttc
taccaacaacaccagcaggctttggcacaggcaagaggtggacgaggaggtggtcgtggg
ggtagaatgggcaatcggaaacctaataagaatgctggtggagcaggtgctcttcagttg
tcgcaacctttcagtcaagatcctaccacacaaagttattcccagcctggcttaacgcaa
ggacatttatcacagggaatgcctgggcctggattgagtggactttcacaaggactttct
caagcggaattatctcaggattcatatatggttgatcagttccaaagtcaaaccgatggc
ctcctctcccaggactccacataccagggtgaccgtgcgtttttcactccagcatcacag
acgcaccacttttcacagccagcattgatggcagagacggataagatcctctggctatga
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integrated database retrieval system
