Macrobrachium rosenbergii (giant freshwater prawn): 136843679
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Entry
136843679 CDS
T10429
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03013
Nucleocytoplasmic transport
mrj03015
mRNA surveillance pathway
Brite
Enzymes [BR:
mrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
136843679 (Upf1)
5.6.2.5 RNA 5'-3' helicase
136843679 (Upf1)
Messenger RNA biogenesis [BR:
mrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
136843679 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
136843679 (Upf1)
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136843679
NCBI-ProteinID:
XP_066968342
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Position
12:complement(57608914..57677832)
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AA seq
1139 aa
AA seq
DB search
MSVDAYGPSSSQSLTFYDTEEATADLLGADTQGSEYEFNLTLGSQTQTQGGGGAGDHLDK
TQASQSQVTVNGDAVEAEVEKATEALGDLQFEEEDEETAFYAKELPDWACRYCGIHDPAS
VVMCNVCHKWFCNGRGNTSGSHIINHLVRAKHKEVSLHKDGLVRDTVLECYACAVKNVFV
LGFIPAKAESVVVLLCRQPCAAQSSLRDMNWDPEQWKPLISDRALLPWLVRVPSEAEQLR
ARQITAQQINKLEELWKENASATFDDLERPGVDEEPQQVCLRYEDGFQYQNIFGPLVKLE
ADYDKKLKESQTQDKIEVRWDIGLNKKICAYFTLAKTDGDMRLMHGDELRLRYLGDLHKP
WSGVGHVIKIPDNFGEEVGIELKSNVGVPTDCRDKFVVDFVWKSTSFDRMQAALRKFAVD
DSSVSPYIYHRLLGHVEVDELIFRHIHLPKQLSAPNLPTLNNSQQYALKHALQRPLSLIQ
GPPGTGKTVTSATIVYQLVKQTGGTVLVCAPSNTAVDQLTEKIHKTGLKVVRLCAKSREA
IDSPVSFLALHNQIRNLEDNGELQKLQQLKEETGELSSADEKRFRMLKKQAEKTLLEAAD
VICCTCVGAGDPRLARLKFHSILIDESMQATEPECMVPVVLGAKQVILVGDHCQLGPVVM
CKKASRAGLSQSLFERLVVLGIRPFRLTVQYRMHPQLAQFPSNFFYEGSLQNGVVDADRT
MKGVSFPWPQLDKPQFFYVTSGQEEIAGSGTSYLNRTEASSVEKLVTRFLNSGVKPEQIG
VITPYEGQRAYLVQYMQYQGPLNQKLYQRLEVASVDAFQGREKDLIIMSCVRSNEHQGIG
FLSDPRRLNVALTRARYGIIIVGNPKVLSKQGLWNHLLHHFKEKKVLVEGPLNNLKESMM
QFSKPKRLINATNPGSHFMNTAMYDAREAMVPGSMYDRSSHINGTMPPPSQCFRGPQYDM
YGRAHDAMDYISADHSQPGLSNLPVPVGMFMNMAHVPPRFYQQHQQALAQARGGRGGGRG
GRMGNRKPNKNAGGAGALQLSQPFSQDPTTQSYSQPGLTQGHLSQGMPGPGLSGLSQGLS
QAELSQDSYMVDQFQSQTDGLLSQDSTYQGDRAFFTPASQTHHFSQPALMAETDKILWL
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacgcctacggccccagcagctcccagagcctgactttttacgacacggag
gaagccaccgccgacctcctcggggctgacactcagggctccgagtacgagttcaacctc
accctgggcagtcagacccagacccaggggggtggaggggcaggcgaccacctggacaag
acgcaggcttcgcaaagccaggtcacagtgaatggagatgctgttgaagctgaggtagaa
aaagccactgaagctcttggtgatttgcagtttgaggaagaggatgaggagactgctttt
tatgctaaggaattgccggactgggcttgtcgctattgtggcattcatgatccagcctct
gttgttatgtgcaatgtttgccataaatggttctgtaatggaagggggaatacatctggt
tcccacatcataaaccatcttgtccgagcaaagcataaggaggttagtcttcacaaggat
ggattggttagagacactgttctggagtgctatgcttgtgctgtcaaaaatgtttttgtg
ctgggctttatacccgctaaagctgaatctgtggtggtcctcttatgtcgccaaccatgt
gctgcacagagttctctgcgtgatatgaactgggatccagagcagtggaaacctctgatt
agtgatcgtgctctgctgccttggcttgttcgtgtaccctcagaagcagaacagctgcgg
gctagacaaattacagcccagcagatcaacaagttggaagagttgtggaaagagaatgct
tcagcaacttttgatgacctggaaagaccaggtgtagatgaagaaccccagcaagtttgc
cttagatatgaagatggtttccagtatcagaatatttttggacctctagtaaaattagaa
gcagattatgacaagaaattgaaggaatcacaaacacaagataaaattgaagtgcgttgg
gacattgggttgaacaagaaaatttgtgcctattttactcttgctaaaactgatggagat
atgcgcctgatgcatggagatgagctgcgtctccgttatctaggggacctccataaacct
tggtctggggtagggcatgtgatcaagatccctgataattttggggaggaggttgggatt
gaattgaaatctaatgttggtgtgccaactgactgccgggataagtttgttgttgacttt
gtatggaaatcgacaagttttgataggatgcaggctgcattgaggaagtttgctgttgat
gattcttcagtctctccttacatttaccatcggctgttgggccacgtcgaggttgacgag
ttgatctttcgtcatattcaccttccaaagcagctgtctgctcctaaccttcctacactg
aataattctcagcaatatgccctgaagcatgccttacaacgtcccctgtctttgatccaa
ggtccaccaggaactggcaagactgttacatcagcaactattgtgtatcagctggtcaaa
cagactggtggcacagttcttgtatgcgctccatccaacactgccgttgaccaactcaca
gagaaaatacacaaaactggactcaaggttgtgcgcttgtgtgccaaatcccgtgaagcc
attgactcgccagtatcatttttggccttgcataatcagatacgcaacctggaggataat
ggagagctacagaaacttcagcaattaaaagaggaaactggagagttatcatctgctgat
gaaaaaaggttccggatgctgaagaagcaggcagaaaagacattgttggaggcagcagat
gtgatctgctgcacatgtgttggtgctggtgatcctcgtcttgctcgtttgaaattccac
tccatcctaatagacgagtccatgcaggccacagaacctgagtgcatggtccctgttgtt
ctaggggccaagcaggtcattttggtgggtgatcattgccagttgggaccagttgttatg
tgcaaaaaagcatctcgagcagggctttctcagtctctttttgaacgtttggttgtattg
ggtatccggccattccgtctcaccgtccaatatcgcatgcatccccaactcgcacaattc
ccttcaaatttcttctatgaaggatctctacaaaatggagtagtagatgctgatcgtacc
atgaaaggagtaagtttcccatggcctcaattagacaaaccccagttcttctatgtcact
tctggccaagaagaaatagcaggttcaggcacatcatacttgaaccgaactgaagcttca
agtgtagagaagttggttacccggtttctcaattctggtgtgaagcctgagcagataggt
gttatcacaccttatgaagggcagagagcttatttggtacagtatatgcagtatcaagga
ccacttaaccagaaattgtatcaacggctggaagttgccagtgtggatgccttccaaggc
cgtgagaaggatttgattattatgtcttgtgtgcgttccaatgaacaccagggaattggg
tttctctcagatcctcgacgtttgaatgttgctctgacacgcgctcgatatggtattatt
attgttggaaacccaaaagtactatctaagcaaggattgtggaatcatttgctacatcat
ttcaaggagaagaaggttttggttgaagggcctctcaacaatctcaaagagtcgatgatg
cagttcagcaagcctaaaagactgatcaacgcaaccaatccaggatcacacttcatgaat
acagcaatgtatgatgcacgggaagccatggtgccaggatctatgtacgatcgttcaagt
cacatcaatggaactatgcccccaccatctcagtgtttcagaggacctcagtatgacatg
tatggacgagcacatgatgcaatggactacatctcggctgatcattctcaaccaggacta
agtaatttgccagtgcctgttggaatgtttatgaacatggcccacgtgccaccccgtttc
taccaacaacaccagcaggctttggcacaggcaagaggtggacgaggaggtggtcgtggg
ggtagaatgggcaatcggaaacctaataagaatgctggtggagcaggtgctcttcagttg
tcgcaacctttcagtcaagatcctaccacacaaagttattcccagcctggcttaacgcaa
ggacatttatcacagggaatgcctgggcctggattgagtggactttcacaaggactttct
caagcggaattatctcaggattcatatatggttgatcagttccaaagtcaaaccgatggc
ctcctctcccaggactccacataccagggtgaccgtgcgtttttcactccagcatcacag
acgcaccacttttcacagccagcattgatggcagagacggataagatcctctggctatga
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integrated database retrieval system
