Macrobrachium rosenbergii (giant freshwater prawn): 136851980
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Entry
136851980 CDS
T10429
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136851980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrj03019
]
136851980
Enzymes [BR:
mrj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
136851980
Messenger RNA biogenesis [BR:
mrj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
136851980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
PUS7L_N
Motif
Other DBs
NCBI-GeneID:
136851980
NCBI-ProteinID:
XP_066982477
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All DBs
Position
24:complement(31661632..31680151)
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AA seq
537 aa
AA seq
DB search
MVDVTNENFDALLDGILSDIKSSSFIAVDTEFTGLLVDPAFKNSFFDDGAHRYQKLCANF
HRVTICQIGLSIFKGVLHSNEYSVTSYNFYLRPCSAVSYDPSFLCQTSSIEFLQKYKFDF
NKWLYGGIHFMNDDAAEMIQSDLLAILKGEKVTDISYELRDHLSKVGSWAASAEEGSTMT
LNLKDNHSHRFLLRAMIRHRFDDLWSESDNGEVIIKKVSADERATLLEQDPNGEIMVKDH
IAELLGFTIIFQHLAKHQKPLIFHNGLLDLMLVYKEFCRNLPHSYEEFKASLHGKFPLIY
DTKYIAAKLKTHFKEKSEQGSNFLNNTSLSELAASLKKDVGVMYFPKISHLGSDKYLQAD
FHHEAGYDAYLTGRCFLSLSHIYAMSQLPSRESHRPMSPREHVFSLKAFANAVMVQRANI
QYMNLSGTDRKPRSPPWLLVEGRNSKRVSPGMVYAALAQYGAVDVMPRNQKSVLVASPSW
ECTRDILRNFKADGPLRAVRYSRWKHSPLTRTLVWSGALVSTGLSAWFIYSTLKKPS
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggttgacgtcactaatgagaattttgatgccttactggatggcattctgtcagacatc
aaatcatcttcatttattgcagttgatacagaattcactggacttctggttgatccagca
ttcaaaaatagtttctttgacgatggagctcatcgctatcagaagctttgtgccaacttt
catagggttactatatgtcaaattgggctgtcaatttttaagggtgttttgcattccaat
gaatactcagtcaccagctataacttctacctgcgtccttgctcagctgtgtcctatgat
ccaagtttcttgtgccagacttccagtattgagtttttacagaaatacaaatttgatttc
aacaagtggctttatggaggaattcatttcatgaacgacgatgcagctgaaatgatccag
agtgatttacttgccatcttgaagggagagaaagttactgatatatcgtacgagctacgt
gaccacctgagtaaagttgggtcttgggcagcatctgctgaggagggaagcacaatgaca
ctgaatctaaaagataatcactctcacagatttctcctgagagcaatgatacgccacagg
tttgatgacctgtggtcagagagtgataatggtgaggtaattattaagaaggtgtcagct
gatgaaagagcaacacttttagaacaagacccaaatggagaaataatggtaaaagaccac
atagccgagctgctagggtttactattatttttcagcatttagccaagcaccagaaacct
ctcatatttcacaatggacttctagatcttatgctggtatataaagagttctgtcggaat
ctcccacattcatacgaagagtttaaggcaagcttacacggaaagtttccactcatttat
gacaccaaatatattgccgccaaattgaagacacatttcaaagaaaaaagtgaacaaggg
agcaactttttgaacaacacaagcctgtcagagctagcagccagtctgaaaaaagacgta
ggagttatgtattttccgaagatttcacatctgggttcagataagtacttacaagcagac
tttcaccacgaggcaggttatgatgcttacctcactggtcgttgttttctgagtttgtcg
cacatatatgctatgtcacaattgccatcgagagaaagtcatcggccaatgagtccaaga
gagcatgtgttttctttgaaagcctttgccaatgcagtcatggtacagagggcaaacatt
caatatatgaacctcagtggaactgacagaaagccgagaagtcccccttggctcttagtt
gaggggcgaaatagcaagagagtttctcctgggatggtgtacgctgctttagcacagtac
ggtgcagttgatgttatgccccgtaatcagaagtccgttttggttgcttcaccatcatgg
gaatgcacaagagatatactgagaaatttcaaagcagatggtcctttacgggctgtacgt
tacagtcgttggaagcactcgcctttaaccaggacattagtatggtctggagctttagtg
tcaactggcttatctgcttggtttatttattcaactctgaagaagccttcttga
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