Macrobrachium rosenbergii (giant freshwater prawn): 136852461
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Entry
136852461 CDS
T10429
Symbol
Msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
136852461 (Msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mrj03400
]
136852461 (Msh6)
DNA repair and recombination proteins [BR:
mrj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
136852461 (Msh6)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
BESS
Motif
Other DBs
NCBI-GeneID:
136852461
NCBI-ProteinID:
XP_066983198
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Position
25:23952785..24003897
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AA seq
1297 aa
AA seq
DB search
MSKQPTLFTFFTKSPKASKPRQETSSSPGTLKLKGSGEHQLSNSNIRFVDVKLLDVVWSK
LDGYPWWPSLICENPTDKTYKRKGQIHVQFFDDPPTRGWVRETFIKPYCVAGENGIPTYK
DPAWVTAVEEANGAVKLSKEDRNMLLVDMIPSDDDDDEVAMDTDAEDDSDKSKENVDVNV
DKSSSRKSKKDSGKEPSKKRRRIILHSDSESEDEYKPEKEAGESEDSGSSGEDEANISEP
ETESEIDSPVKRPIKRKKPSATPSGKSGSSFTDSPSSVKTPSHSSILPKVSESTKSKLSL
FAAKETPAKSNEGEEWPFMKCSWLKPENIRDRDRKRPSDPDYNPRTLFVPDNFLNSQTPG
MRQWWELKSLHYDTVLFFKMGKFYELFHMDAILGVQELGLIMMKGEQAHVGFPEIAYGRY
SSTLIEKGYKVARIEQTETPEMLEKRIKSMTKPTKFDRVVKREVCQISTKGTRVYSVLDG
EPSESSTSYLLALVEKPMRGAGEGSELGVAFIDTSIGTFHLGQFTDDRHVSRLRTLMAHY
PPVQILVERGRLSQKIRRVVNSTVPSNLCDDLVPEKEFWTSSKTLSFLAEGTYFKGEDSS
LQWPEELKNLLDENDTLGLTAHPNYELAVSALGALVWYLMDCHLEEQLLTRKLFTLYNPV
DVVAAEEKANKGSLPSFIRNRHHMVLDGVTLRNLEIFENTRGGVDGTLYQKLDRCSTPFG
KRLLRKWLCAPLCNPSSIESRLDAIEDLNNHPDIVEEVAPLLKTLPDLERLLAKIHTQGL
NRSSSHPDSRAIYFEEVKYNKKKVVDFLAALGGFKTCMEIQKAFKSVADSLQSKLLQKCL
NFTENGGDFPSLKEVLKFFDTAFNHEEAKREGTIIPSHGVDSEYDSAIEQIKTTKDRLAD
YLKEQCRHFGAKVVYWGNDKKRYQLEVPDHACKKANDEYELTSQKKGFKRFWTETTKSLL
SDMASGEEHRDAALRDIARRIFNQFDQHREKWEAALQCIAVLDVMISLARYSKETSTVRP
QVVLPKDVKPFIEIRDGLHPCVVTTYSGDEFIPNDLVVNSSSEDTHAPLVLVTGPNMGGK
STLMRQTALICILAQLGSFVPAGSCQFTPIDRIFTRLGASDRIMMGESTFFVELAETSSI
IQHATQHSLVLVDELGRGTATYDGTAIASAVVQALVKLDCRTLFSTHYHSLVDDFANMEN
VSLGHMACMVESENEEDPSQETITFLYKFIRGACPKSYGFNAAQLANLPDGVIRKGSHKA
RELENFTVKKRLFCKIFESKSEVSQIRSALKNLVDVH
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcagcccactctcttcacgttcttcacgaagtccccgaaggcgagcaagccc
aggcaggagacgtcatcatcgcccggcacgctgaaattgaaaggatcgggtgagcaccaa
ctcagcaacagcaacatcagattcgttgatgtaaaactgttggatgttgtgtggagcaaa
cttgacggatacccttggtggccaagtctcatctgtgaaaatcctactgacaaaacttat
aaacgaaaaggacaaatccatgttcagttctttgatgatccccctactcgaggctgggtt
agggaaacgtttattaaaccttactgtgttgctggggagaatggcatccctacttacaag
gaccctgcttgggtgacagcagtggaggaggctaatggtgctgtgaagctgtcaaaagag
gatagaaacatgcttctggtggatatgattccttcagatgatgatgatgatgaagtagcc
atggatactgatgctgaagatgatagtgacaaaagcaaagaaaatgtagatgttaatgtt
gataaatcatcatcccgtaagagtaagaaggacagtgggaaagaaccaagtaaaaagcgt
cgaagaataatcctccactctgatagcgagtctgaagatgagtataagccagagaaggag
gcaggagagagtgaagactccggaagctcaggggaagatgaagcaaatatatctgaacca
gagacagaatcggagattgattctcctgtcaagagaccgatcaagcggaaaaagccatca
gccactccttcaggtaaatcaggctcctcgtttacagattctccatcttcagtgaaaact
ccatcacattcatcgattttaccaaaagtgtcagaaagtactaagtcaaagttgtctctc
tttgcagcaaaggagacaccagctaagtcaaatgaaggagaggaatggccttttatgaag
tgctcatggctgaaaccagaaaatatcagagatagggacaggaaacgtcccagtgaccca
gactataatccaagaaccctttttgtcccagataattttttgaattcacaaaccccgggg
atgagacagtggtgggagctgaagtctctgcattatgacactgttttgttctttaaaatg
gggaagttctacgaactgttccatatggatgctatattaggggtgcaagaacttggtctt
ataatgatgaagggagaacaagcccacgttgggtttccagaaatagcttatggacggtac
tcatcaacgttaattgaaaaaggctacaaggtggccaggatagagcagacggaaactcca
gagatgttggagaagcgtatcaaaagtatgactaaaccaactaaatttgatcgtgtcgtt
aagcgagaggtgtgccaaattagcaccaaaggaacacgtgtttacagtgtcctcgatggg
gaaccctctgagtcgtcaacttcatatttgttagcattagtagaaaagcctatgagagga
gctggtgaaggaagtgaattgggtgtagcatttattgatacaagcatagggacattccat
ctaggacagttcacagatgatcgtcatgtatctcgtcttcgtactcttatggcgcactat
ccacctgttcagattttggtcgagcgagggcgtctctctcagaaaattcgaagagttgtt
aattcaactgttccttcaaacttgtgtgatgatctggttccagaaaaggaattctggaca
agtagcaagacactcagtttcctcgccgagggaacatacttcaaaggggaagactcttcc
ttgcagtggccagaagaactgaaaaatctgttagatgaaaatgatacattaggcttaaca
gctcatcccaattatgaactggctgtgtctgcactcggcgctcttgtatggtatttgatg
gattgccatttagaggaacagttgttgacaagaaaactatttactctttacaacccagtg
gatgttgtagctgccgaagaaaaggcaaataagggatccctcccttcgtttataagaaat
agacatcacatggtacttgatggtgtgacacttcgtaatttagaaatatttgaaaatacc
agaggtggtgttgatggaacgctttatcagaagctggatcgatgctcaacaccctttggg
aaaaggttgcttcggaaatggctttgtgcacctctttgtaatccatcaagtattgaatct
cggttagatgccattgaagacttgaataatcatcctgatatagttgaagaggttgctcca
ctcctgaagactctgccagacttggaacgccttctcgccaaaattcacacacagggattg
aacaggagttcaagccatccggatagccgtgctatttactttgaagaagtgaaatacaat
aaaaagaaagtcgttgactttcttgcagccctcggtggcttcaaaacatgcatggaaatt
cagaaagctttcaaaagtgtagcagattcactacagtcaaagctattacaaaagtgtcta
aatttcacagaaaatggtggagatttcccatctcttaaggaagttctcaagttctttgat
actgcttttaatcatgaggaagcaaaaagagaaggtacaatcatccctagtcatggtgta
gacagtgagtatgacagtgctattgaacaaattaaaacaaccaaggacagacttgcagat
tatctgaaggagcagtgtagacactttggagcaaaggttgtttattggggtaacgacaaa
aaacgataccagcttgaggtaccagatcatgcttgcaagaaggctaatgacgagtatgag
cttacaagtcaaaagaaaggattcaagcgcttctggacagaaacaacaaagagtttactc
agtgatatggcctctggggaggaacacagagacgcagccttgagagatattgcacgaaga
attttcaatcagtttgatcaacaccgtgaaaagtgggaggcagcattgcagtgcatagct
gtactcgatgtcatgatctctttagctcgctactccaaagagacaagcactgtcagacct
caggtagttttaccaaaagatgtaaagcccttcatagaaatccgtgatggacttcatcct
tgtgttgtgacaacctacagtggtgatgaattcattcctaatgatttggtagttaacagt
tcaagtgaagatacccatgctcctctagtattggtaactggacctaacatgggtggaaaa
tcaaccttaatgagacaaacggcattgatttgtatacttgctcagttagggtcttttgtt
cctgctggttcttgtcaatttacccccattgacagaatcttcacccgcctgggtgcctca
gatcgaatcatgatgggagagagcaccttctttgtggaactcgcagagacctcttcaatt
attcagcatgccactcagcactcgcttgtgcttgttgacgaactaggtagaggaacagca
acatacgatggtacagcaatagcatcagctgtagttcaggctttggtgaaattggattgt
cggacattgttttcaacacattaccattcccttgtggatgactttgctaatatggagaat
gtctctttgggccatatggcttgcatggttgagagtgaaaatgaagaggatccatcacag
gaaaccatcacattcttatacaagtttatcagaggagcttgcccaaaatcatatggtttc
aatgcagctcagctggccaatcttccagatggtgttataagaaagggaagccacaaggcc
cgtgagttagaaaatttcactgtaaagaagcgactgttctgcaaaatctttgaaagcaag
agtgaagtttcccaaatccgcagtgcactgaagaacttggttgatgttcattag
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