KEGG   Macrobrachium rosenbergii (giant freshwater prawn): 136853006
Entry
136853006         CDS       T10429                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
mrj  Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:mrj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    136853006
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mrj03021]
    136853006
   03036 Chromosome and associated proteins [BR:mrj03036]
    136853006
Transcription machinery [BR:mrj03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     136853006
   Coactivators
    SAGA/TFTC/STAGA complex
     136853006
Chromosome and associated proteins [BR:mrj03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     136853006
    STAGA complex
     136853006
    TFTC complex
     136853006
    SAGA complex
     136853006
    SLIK complex
     136853006
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 WD40_Gbeta WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd EIF3I TFIID_NTD2 WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 NBCH_WD40 Beta-prop_EML WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_Aladin Beta-prop_SCAP Beta-prop_VPS8 Beta-prop_RIG_2nd Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_HPS5 Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_Nup120_160 WDR54 Beta-prop_RIG_1st Beta-prop_WDR35_TULP_N Tricorn_2nd eIF2A PROPPIN Beta-prop_NOL10_N Cytochrom_D1
Other DBs
NCBI-GeneID: 136853006
NCBI-ProteinID: XP_066984237
LinkDB
Position
26:8699789..8714038
AA seq 652 aa
MKKVRTEKVMANVNDYLKRRNLELLGSGGATSSSEQQAGVLGLVSPSTPNTFTFSTTSTQ
HTHVDHQYVRLKSWMMEASEPCRSELSQVLFPLFVHLYLELVTGTGRQAANKFFKKHYQV
FLVNRDYEHTLSQVIGASGVNASGDLNSSPVIQNLKSGKYLVRLSELTLNYFLRYLKASE
NPTLLQIFNTYIEVEVDESGAGSTGAVFRTPDASSLGSGNLVNGHTPESLSSEAASTADG
MDCSVEELRKVKEVMSAIRIALPTPPSLCVYTVYNAYNGLSCATVNKQGRLLSCGFEDSV
IKLWKLTPSDHNAGLGRAKTGMGPRGGISHTLLACDDSRTEDDEEGMEEEERDEDEMAAD
LRNGGRRRNRGGELFALRGHSGPVYDMAFTHESSHLLSVSEDCTMRLWDLESGQAVALYR
GHQYPAWCLAVAPLTMYMATGSYDTTVRIWYTDATYPLRTLSGHTRSVDSVAFHPNGSYL
ASGSCDRSIRLWQVTDGDVARILPHHKTAINSLAFSPNGKYLASGGEDGTVAVWDLAAGR
VITELFSGTQATTGIPGVSTPHMDSVVDLSWSTDSSLLMSASSDGCVRTSQLKQGIASDG
GSAWDLCEVGQFQCCGNSNGSSTSYVLGGSLLHTSFTCHNYLTAVVAQDVER
NT seq 1959 nt   +upstreamnt  +downstreamnt
atgaaaaaggttagaacggagaaagtgatggccaatgtcaacgattatttaaaaaggaga
aatttagagttacttggctctggaggtgcgacaagttcttcagaacaacaggctggtgtt
ttaggcttagtttccccatcgacacctaacactttcaccttctctacaacctccacacaa
cacactcacgtagaccaccaatatgtcaggctcaagtcctggatgatggaggccagtgag
ccatgccgttcggaattgtcacaagttctgtttccgcttttcgttcatttgtatctggaa
ctcgtcaccggcactggccgtcaggcagctaacaaatttttcaaaaaacattaccaggtg
ttcttggtgaatcgtgactatgagcacacactgtcacaagtcataggcgcttcgggtgtg
aacgcatctggagatcttaactcctctcctgtcattcagaatcttaagagtggaaagtat
ttggtacgtctgagtgagctgacgctcaactacttcttaaggtacctcaaagctagtgaa
aatcctactttgcttcaaattttcaacacttacattgaagttgaggttgatgaatccggt
gctgggagtactggcgcagttttcaggactccggatgccagttccttgggttctggtaat
ttagtcaatggacacactcctgagtccctttcttctgaggcagcatccacagctgatgga
atggactgtagtgtagaggaactgaggaaagtgaaagaggtgatgtctgccatcagaata
gccctgccaacaccaccttctctgtgtgtgtacactgtgtataatgcgtacaatggtctt
agttgtgcaactgtgaacaaacagggtaggctgctatcttgtggattcgaagacagtgtg
ataaagctgtggaaactgacaccctcagatcataatgcaggtttgggtagggcaaagaca
gggatgggtcctagaggtgggatatcccacacactcttagcttgtgatgactcacggact
gaagatgatgaagagggaatggaagaagaggagagggatgaggacgaaatggcagcagat
ttacggaatgggggcagaaggagaaatcgcggaggtgaattatttgcgttgagaggccat
agtggacctgtttacgatatggcttttactcatgagtcaagtcatttattatctgtcagt
gaagattgtactatgcgtttgtgggatttggagagtggtcaggcagtggcattatataga
ggacatcagtacccagcttggtgcttggcagttgccccactcacaatgtatatggcaact
gggtcctatgataccactgtgagaatatggtatacagatgcaacatatcctctgcgtacc
ctcagtggtcatactcgctctgtggatagtgtagccttccaccctaatggctcctacttg
gcatctggatcgtgtgatcgtagcattaggctttggcaagtgacagacggggatgttgca
aggattttgcctcatcacaagactgctattaattccttagccttttccccaaatggaaag
tatcttgcatctggcggtgaagatggaacagttgctgtttgggacctggctgcgggtcgg
gttataacagaactctttagtggaacacaagcaactacggggatccctggggtatcgacg
cctcacatggactcggttgttgatctcagctggtcaacagactcatctctgttaatgtct
gcttcaagtgatggatgtgtacgcacaagtcagcttaagcaaggaatagctagtgatgga
ggatctgcatgggacctgtgtgaggtgggccagtttcagtgctgtggcaattcaaatggc
agtagtacaagttacgtattgggcggatccctacttcacacttctttcacctgtcacaac
tacctcactgctgtcgtagcacaggatgttgagagatag

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