Macrobrachium rosenbergii (giant freshwater prawn): 136854627
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Entry
136854627 CDS
T10429
Symbol
Mp
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mrj04147
]
136854627 (Mp)
00535 Proteoglycans [BR:
mrj00535
]
136854627 (Mp)
00536 Glycosaminoglycan binding proteins [BR:
mrj00536
]
136854627 (Mp)
Exosome [BR:
mrj04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
136854627 (Mp)
Proteoglycans [BR:
mrj00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
136854627 (Mp)
Glycosaminoglycan binding proteins [BR:
mrj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
136854627 (Mp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
136854627
NCBI-ProteinID:
XP_066987261
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Position
29:complement(16332690..16990554)
Genome browser
AA seq
1274 aa
AA seq
DB search
MASSHRRSMLAIAPYLVMVLGLVLCVKTIAASSLFADSNTVPSSEALEELDLIQSIDVPF
SDPLTQYFVTGFDGFPAFGFRLGANIKQPYRLFLPERFYRVFSITVALKPDNANSMFAFA
VTNPLENIIQLGVGLTPAAEVGFTNISLYYTDVERHMTSQTIASFIVPEFLGTWSRFAFS
VGEDEIQFFYNCELYNSLLVKRVPKQLVFDSASTLYVGQAGGIFKGDFEGALQELKVFND
PGRANVQCDDSISSFGSGDGRSDISIEDEILSDMEDDEEITLPSFEGSGYDSIDGPLPPP
IPPPPPGYGIPGPKGEKGEPGERGPPGESVAGPPGPPGPPCASEGDMGGAVNFTPAGFEG
GVQGPPGPMGECSCNTSSLVAMVLTQIPKGPPGPKGPQGRDGMPGTPGTAGTPGPPGERG
LPGPPGLKGDRGEQGDPGPEGLQGPKGESGMDGAPGLPGERGPRGPPGPPGWGNPGGIDV
ERANDGDQSRLGIPGLPGPKGDRGYPGPRGTRGYPGIKGERGNTGKDGGKGEPGRPGEPG
FPGPKGEQGAPGTNGVPGPPGFIGLPGDKGQKGDRGPPGIGEPGPPGSPGGLTAHDRRII
IDQLINTLESKTADPDGNFGTGGINLYDNSGGVPWVTDYDDEDFALEGSGLVAYKPFYPK
GGLRGPPGPPGPPGIPGIQGSPGNPGIPGNPGLPGNKGISGVKGARGENGLPGLPGETGS
QGPQGLKGDVGPRGPPGPITTIIQPDGTNITVVKGSKGDRGRRGKRGRPGQPGPPGTFGD
LGLPGWPGLPGRPGPPGPPGNPGIGIKGETGAPGPPGPPGPPSPSSAGGFFNGILGGSSS
DDTRNSNPGPPGLPGPVGPPGPPGPPGPPGLPAQPLRGIDGEMFIPVPGPAGPPGPPGPP
GPPGLSIEGPEGRPGAPGSPGRGFPGKPGPPGEPGSSIPGPRGNLGGIAELRRWISGKPR
NRGRAGDGSERSFAVVPGAITFSTRQDMLKMSEASLVGTLAFIIEEEALLVRVSAGWQYV
ALGSVIPLPSPTPPPLTTPLNTESARPPPPEGRSLVVENEPKLRLAALNEPFTGDMTGVR
GADYACYREARRAGLSGTFRALLTSRVQNLDSIVRYSDRSLPVVNLKGEILFNSWRDAFS
GSGGTFAQKPRIFSFDLKNVVKDPTWPQKYIWHGSNLDGERALSSYCDAWHTNAKDVVGL
ASSLHKNRLLGQERMGCHNSFIVLCIEATGKAHFRRRRHVPHSSHTSSSLSLEQEMTSEE
YQEFLNKITNEENV
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttctcaccggaggtcgatgcttgcaattgctccttacctggtaatggtgttg
gggcttgtgttgtgcgtcaaaactattgctgcatcatcgctcttcgcggattcgaacacc
gtgcccagctcagaagctttggaggaactggatttaatccaatccatagatgttccattt
tcggatcctttgacgcaatacttcgtcactgggtttgatgggttcccggcatttgggttc
cgcctgggagcgaacatcaaacagccctatcggctatttctgccagagaggttctacagg
gttttctcgataacggtggccttgaaaccagacaatgcgaattctatgtttgcgtttgcc
gtcacgaacccgctggagaatatcattcagttgggggtgggcctgaccccggcggcagaa
gtgggcttcaccaacatctccctctactacacagatgtcgagagacacatgacgtcacag
acgatagcctctttcatagtgccggaattcttggggacttggagcagatttgcattcagc
gtaggggaagatgaaatccagtttttttacaactgcgagctgtacaacagcctcttggtc
aaacgagtccccaaacagttggtttttgactcggcgtcgacgctctacgtcgggcaggca
gggggcattttcaaaggggactttgagggcgcccttcaggagctcaaggtcttcaacgac
cctggcagagcaaacgtccagtgcgacgactccatctcgtcctttggttcgggagatggg
agaagcgatattagcattgaagatgaaatcttgtctgacatggaggatgacgaggaaatc
accttgccctccttcgaagggtctggttacgacagcatcgatggacctctgcccccaccc
atacccccgccaccccctgggtacggcatcccaggacccaaaggagaaaagggcgagccg
ggcgaaaggggccctccaggagagtctgtggctggtccacctggtcctcctgggccccct
tgtgcgtcggagggcgacatgggaggagcagtcaatttcacgccggcaggatttgaaggg
ggcgtacaaggccctccaggcccaatgggcgaatgttcctgcaacacgtcatccttagtt
gccatggtgctgacgcagatcccgaaaggtccccccgggccgaaaggcccccagggaaga
gatggcatgccggggacccccgggacggcaggaacccctgggcccccgggcgaaagggga
cttccaggaccccctggtctgaaaggagacagaggagagcaaggtgatccaggacccgaa
ggtcttcaaggccccaaaggagaatcgggcatggacggtgccccaggacttccgggagag
aggggcccgaggggtccaccagggcctcctggttggggtaatccaggaggcattgacgtg
gaaagggcgaacgacggcgatcagtcgcgcctcggcatccccggccttccaggccctaag
ggtgacaggggttaccctggaccgaggggtacccgcggataccccggtatcaaaggtgaa
cgaggaaatacgggcaaagatggaggtaaaggggaaccgggtcgccccggtgaacctgga
ttcccaggccctaagggagaacagggtgcacccgggacaaatggagttcctgggccaccg
ggattcattggtctaccaggagacaagggccagaaaggtgacaggggtccacctggtatt
ggggaaccaggccctcccggtagcccagggggactcacggctcatgatagacgaataatc
atcgaccagctcatcaacacactcgagagtaagacggctgatcctgacggcaacttcgga
actggcggcataaatctctatgataactctgggggagttccttgggtgacagactacgat
gatgaagatttcgctctggagggatcaggactggtggcctacaagcctttctatccaaag
ggtggcttaagaggacccccaggaccacccggccccccaggtataccaggcatccaagga
tctccaggaaatcctggtatcccaggaaacccaggactgcctggaaacaaaggaatttcg
ggagtaaagggtgcaagaggtgaaaatggactaccaggactcccaggtgaaacaggatct
caaggcccccagggtttgaaaggtgatgtcggccccaggggtcctcctggtcctatcact
accattatccagcctgatgggaccaacatcactgtcgtaaagggcagcaaaggagaccgg
ggcaggcgaggcaagcgaggtcgtccaggccaaccaggtccaccagggacattcggtgac
ctgggccttcctggctggccgggactaccagggagaccaggtccaccaggcccccctggt
aacccaggaatagggatcaaaggagaaactggagctccaggaccaccaggacccccagga
cctccatcaccatcttctgcgggaggattcttcaatggtatccttggtggcagcagttca
gacgacacaagaaactcaaatcctggcccaccaggtttgccaggtcctgttgggccacca
ggtccccctggcccacctggaccacctgggttgcctgctcaaccgcttagggggattgat
ggggagatgttcattcctgtacctggtccagcaggaccaccaggtccacctggtcctcct
ggccctccagggctgtccattgaaggccctgagggtagaccaggtgcccctgggtcacct
ggaagagggttccctggaaaaccagggccacctggggagccaggttccagcatacctggc
ccaagagggaaccttggaggcattgctgaactacgccgatggatctctggaaagcccagg
aatagaggtcgcgcaggagacggcagtgaaagatcctttgctgttgtcccaggggccatt
accttttctacaagacaagatatgctaaagatgagtgaagcttctctggtagggactttg
gcattcataattgaagaggaagcactccttgtgagagtcagtgctggatggcaatatgtt
gcgttaggatctgtgatccccttgcccagccctacgccaccgccattgacaacacccctg
aacacagaaagtgctcgaccaccacccccagaaggaagatcacttgttgtggaaaatgaa
ccaaagctacgtctggcagcgctcaacgagccgtttacaggagacatgacaggagttcgt
ggtgccgattatgcctgttatagggaggctagaagagctggtcttagtggaaccttcaga
gctcttcttacatctagggttcagaacttagattccatagtccgctattcagacaggagt
ctgccagttgtcaatctcaagggagagattctgttcaactcttggcgggatgccttctca
ggatccggaggaacttttgcacagaagcctaggatctttagctttgatttaaagaatgtt
gtgaaggaccccacatggccacagaagtatatctggcatggctccaacttggatggagaa
agggctctttcatcctactgcgatgcatggcacacgaacgccaaagatgtcgtgggctta
gcatcatccttgcacaagaatcgtctcttgggtcaggagaggatgggctgccacaactct
tttattgtcctatgcattgaagccaccggaaaagcacacttcaggcgcagacgccatgtt
cctcactcatcgcacacatcttcatcgttgtcattagaacaggagatgacaagcgaggag
tatcaggaatttttgaataagatcacaaatgaagaaaatgtgtga
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