Macrobrachium rosenbergii (giant freshwater prawn): 136855516
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Entry
136855516 CDS
T10429
Symbol
Mtr4
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136855516 (Mtr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrj03019
]
136855516 (Mtr4)
03041 Spliceosome [BR:
mrj03041
]
136855516 (Mtr4)
03009 Ribosome biogenesis [BR:
mrj03009
]
136855516 (Mtr4)
03016 Transfer RNA biogenesis [BR:
mrj03016
]
136855516 (Mtr4)
Enzymes [BR:
mrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136855516 (Mtr4)
Messenger RNA biogenesis [BR:
mrj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
136855516 (Mtr4)
Spliceosome [BR:
mrj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
136855516 (Mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
136855516 (Mtr4)
Ribosome biogenesis [BR:
mrj03009
]
Eukaryotic type
Pre-60S particles
Helicases
136855516 (Mtr4)
Transfer RNA biogenesis [BR:
mrj03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
136855516 (Mtr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
SbsC_C
nSTAND3
B277
Motif
Other DBs
NCBI-GeneID:
136855516
NCBI-ProteinID:
XP_066988731
LinkDB
All DBs
Position
31:32809023..32821298
Genome browser
AA seq
1022 aa
AA seq
DB search
MACFDEDLFDFVDEDEDEQVERLPEIDAVDEDENEEAAKELQKLLVKREAEEEPNIKGSS
KKLKSHVVQETKSELRQAEEIPRIAVHSIETYEACTHEVAVPVGQSYIPLEASKEKPAKS
YPFMLDPFQKEAILCIDNEQSVLVSAHTSAGKTVVAEYSIAKCLQNKQRVIYTTPIKALS
NQKYRDFSDEFEDVGLLTGDVTINPNASCLIMTTEILRSMLYRGSEVTREVGWVVFDEIH
YMRDKERGYVWEETIILLPATVHFVFLSATIPNASQFAQWICYLHHQPCHVVYTDYRPTP
LQHYIFPAGGEGIYLVVDEHSKFREDNFNAAMTIIQNGPEQAAPKGRKVGAQQAGDCFKI
VKMIMERNFAPVIIFSFSKKECEAYALQMSKLDFNQPEEKTLVDEVFENAISILSDEDRQ
LPQVISVLPLLRRGIGIHHGGLLPIIKEAIEILFGEGLIKALFATETFAMGLNMPARTVL
FTSVQKFDGTDFRWVTSGEYIQMSGRAGRRGKDDKGIVIMMVDEKLNTSVVKNLVHGKAD
PIDSAFHLTYNMVLNLLRVEQINPEYILERSFYQFQNFSAIPDLCDRVAKSEKDLERMHI
PRESEVESYYKIKQTIHNLKMERHSFMTRPIYIMPFLQPGRLVYIKNNEDDFGWGVVLTY
KKKEDKKNPLEAPVVTIDAILRVSEASAAKKVTSELKPPKPGEKSEPVVMSVLLKLVHDI
SAVRLKLPEDLKSLDQRVMVMKMVQEALRRVPEDQFLLDPIRNMKIKDEVFVDICGKLEK
FSARLESHKLHNDPQCDELYAVYEKKMEMMKEYQNAEYDLKKAKSVLKMDELKCRKRVLR
RLGYATAQDVIERKGRVACELSAADELLITEMLFNGLFNELSPAQTCALLSTFVCDEKGT
EMPRLGEELSGPLRQMQDMARRIARVSHECKLEINEDSYVEQFRPFLMDVVYEWCNGASF
LELCKKTDIFEGSIIRAMRRLEELLRQMVQASKAIGIDLENKFSEGIKLLKRDIVFAASL
YL
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgttttgacgaagaccttttcgatttcgtcgatgaagatgaagacgagcaggtc
gagagattgccggaaatcgacgcagtcgacgaagatgaaaatgaagaagctgcaaaggaa
ttgcaaaaactgcttgtgaagagggaagcagaagaggaaccaaatattaagggttcttca
aagaaattaaaatctcatgttgttcaagagaccaagtcagaacttcggcaagcagaagaa
attccacgaatagcagttcacagcatagaaacatatgaagcttgcacacatgaagttgct
gttccagttggccagtcttacattccacttgaagcctcaaaggagaaaccagcaaagtcc
tacccatttatgctagatcctttccagaaagaagccattctttgtatagacaatgagcag
agtgttttagtgtctgctcacacatcagctggtaagacagtggttgcagaatactccata
gcaaagtgcttgcagaataaacagcgagtcatttacacgacgcccattaaagctttaagt
aatcagaagtatcgtgactttagtgacgaatttgaagacgtcggtttactgactggtgat
gtcacgatcaatccaaatgcctcctgtcttattatgacaactgaaattctaaggagcatg
ctctacagaggctctgaagtcaccagagaagttggttgggttgtctttgatgaaattcat
tacatgagagacaaggagcgtggctatgtttgggaagaaaccattattcttttaccagca
actgttcattttgtgtttctttctgctactataccaaatgccagccagtttgcccagtgg
atatgttatctccaccaccaaccttgccatgttgtatacactgactatcgacccacacca
ctccagcattacatatttcctgctggtggtgaaggtatatacctagttgtagatgagcac
tccaagttccgagaagacaatttcaacgctgccatgaccattattcaaaatggtcctgaa
caggcagctccaaaaggaaggaaagttggagcgcagcaagctggtgactgttttaaaata
gtgaaaatgattatggagagaaattttgcacctgtcatcatcttcagtttttccaaaaag
gaatgtgaggcatacgccctacagatgtccaaattagactttaatcagccggaagaaaag
acgcttgttgacgaagtttttgaaaatgccatttccatcctatcagatgaggacaggcag
ctgccacaagttatttctgtgttaccattactaagaagaggaattggtatccatcatgga
ggacttttacccatcataaaagaagccattgagattctgtttggtgaaggcttgattaaa
gccctgtttgcaaccgagacctttgccatgggtttgaacatgcctgctagaactgtgctc
ttcacatctgtacagaagtttgatggcacagatttcagatgggtcacctctggagaatat
attcagatgtctggtcgagctggccgacgaggaaaggatgacaagggtattgtaatcatg
atggtggatgaaaagctgaacacttcagtggtgaaaaaccttgttcatggaaaagcggat
cccattgattcagcctttcatcttacatacaacatggttcttaacctgcttcgagttgaa
cagattaacccagaatacatcttggaaaggtccttctaccagtttcagaatttctcagct
attccggacctttgtgatcgtgtagcaaaatcagagaaagacttggagagaatgcatata
ccgagagaatcagaggtggagagctattacaagattaagcagaccatccacaatctgaag
atggagcgacattctttcatgacaaggccaatatacattatgcctttcctgcagccgggg
agacttgtgtatataaaaaataatgaagacgattttggctggggagtggtgctaacatac
aagaagaaggaggataagaagaatccactggaagctcctgttgtaactatagatgccatt
cttcgagtttccgaggcatcagcagccaagaaggtcacatcagaactgaagcctccaaag
cccggtgaaaagagtgagccagtggtgatgtccgttctactaaaactagtccacgatatt
tctgcagtaagactaaagttacccgaggacctgaaatcacttgaccaaagagtgatggtt
atgaaaatggttcaggaggctctaaggcgtgtccctgaagaccagttcctgttggaccca
atcaggaatatgaaaattaaggatgaagtgtttgttgatatttgtggcaaactagaaaag
ttcagtgctcgcttagaatctcacaaactgcacaatgatccacaatgtgatgagctgtac
gctgtatatgagaaaaagatggagatgatgaaagagtaccagaatgctgagtatgaccta
aagaaagccaaaagtgttttgaaaatggacgaattaaaatgccgaaagagagttctgcgt
cgtctaggatatgccacggctcaggatgtcatcgaacgcaaaggacgcgttgcatgcgaa
ttgtcagccgcagatgaactcctcattactgaaatgctatttaatggtctctttaatgag
ttatcacctgctcagacttgtgctctgttaagcacgtttgtgtgtgatgagaagggcaca
gaaatgccccggctgggtgaggaattatcaggtccacttagacaaatgcaagacatggcg
cgacgcattgctcgtgttagtcacgagtgtaagttagagatcaatgaagactcttacgta
gaacagttcagacctttccttatggatgttgtttatgagtggtgtaatggagcatcattt
ctggaactttgcaaaaagacagatatttttgaaggttcgattatccgagcaatgagacga
ctggaggaactactaaggcaaatggtgcaagcgtcaaaggcaattggaatcgatcttgaa
aataagttttctgaaggcatcaagttattgaaacgtgacattgtttttgctgccagttta
tacttataa
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