Macrobrachium rosenbergii (giant freshwater prawn): 136856410
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Entry
136856410 CDS
T10429
Symbol
Spt6
Name
(RefSeq) transcription elongation factor SPT6 isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrj03021
]
136856410 (Spt6)
03036 Chromosome and associated proteins [BR:
mrj03036
]
136856410 (Spt6)
Transcription machinery [BR:
mrj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
136856410 (Spt6)
Chromosome and associated proteins [BR:
mrj03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
136856410 (Spt6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
SPT6_acidic
Spt6_S1
Tex_YqgF
HHH_9
SH2
HHH_3
Tex_N
S1
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
136856410
NCBI-ProteinID:
XP_066990369
LinkDB
All DBs
Position
3:62648675..62711117
Genome browser
AA seq
1861 aa
AA seq
DB search
MSHFMDLEAEESEDDDAEYNENEKKMLKKLKTSKVVDSSEEEEDDEDMIREENKGFINDD
DEEDDDDAGSDSDSDGDTKGKRRKRDDDDDDDLNGDNLDDDDLDLIEENIGVKLDRKKKF
KRLKIDDEDSDAEADVQGQIRRDLFEGSGDEEEDEGGTGSHAPQQHETYASEEEDEDSDG
EGNFIVDDDGQPISKPKRKGLGDEGLEAARDIFGCDFDYGEFDQYEDWEEGEEDEEDEDE
DYEDDDEDGRERRRSRKERKTVKKSIYEVFEPIELERGHLTDQDQQIRKLDIPERFQLRQ
IPVTRTRNEGDDRASDKELDQEAKWIYHHAFYKPFISNQEGREERRHRRDFNMIKKIYNA
LDLMRNSTCEVPFIAFYRKEEVQPELNIHDLWKVYRWDEKWCQLQRRKENLRTTFQKMSE
YQGDIIMKDLDAPLPDSFRMLSEEDIEKIEEIETSEQFNDCYKQFLLYYGKDQTEMRAHI
KAKQKEKSSTTRVTRTIKVMKKVKRKKKKKKNLIIEDDDEDEVEKDKEKESSEADGESGD
KEKDEDKEKSEDGADKEKSEEDVEKDKEDKEGEENDVDSTKKGKSKDDDDDDDTESEEEV
ETEVEEEVEDEVQEPEEDAEDLKKAVRRHEYELLRRAGIDSLAKKFGLTPEQYSHNVRDS
YQRYDVEQCQEEPLKEAEKYINKMCSTPERVLEAAVRMVGWQLACEPLVRRSIRETYFER
AKINIRPTPHGKKLIDEHHPLYSLKYVTSKPVTDLQGDQFLRLKCGVEDKLVTVSFADTV
EGNTSRNYLDELKQLYYRDEFSKIVQDWNELRGRAVTFACKRVIEDLKRELSQRLLEEAK
LHVIEQCCSKLYNWIKVGPYNPGDFTDEDEDDWDTSKGFRVFSIAYVPDLSQAAFGSCID
IDGDCCEYIRLPHLLKRRDAYNERDAMAKENDIRRIQDFIMRRKPHVVAVSGESREALMV
QEDLVQILKDLEEQEQFPKINVEIIDNDLADIYSISKKGEADFLDYPPLLRQAISIGRRV
QDPLIEFSQLCNPDDELLNLKFHPLQSQITEAELLDALYIEFVNRTNEVGVDLNRAVAYP
YTQNLVQFICGLGPRKANLLLKTMKQNNQRLENRNQLVVNFHMGPKVFINCAGFIKIDTN
ALGDSENYIEVLDSTRIHPEAYDWARKMAVDALEYEDEEGKPAEALEEILETPDRLSELD
LEAFATELQNQGFGKKNTTLYDIRHELNYRYKDFRTPYQSPTADEVFNMLTKESPETFYV
GKLVQVTVTNFLHRKPRGDQLDNANPVRNEDTGLWQCPFCLKNDFPELSEVWNHFDAGDC
PGQAIGIRVRLDNGISGFINIKNLSDKTVTNPAERVKRRGLVLCRIMKIDPEKFSVELTS
RTSDLQDRDNKWKAPKDPYYDLHLEEEDTNVDRQKKEKRKTQYQKRVIAHPAFRNIDYNE
AEKVMQQLEQGDVIIRPSSKGNDHLTATWKVTDGICQHIDILEQDKQNDFSLGQKLWIGS
EEFEDLDEIITRHILPMASNVRQILEYKYYKESIMGNKDKAKEWLFMEKKKTPKNIPYVF
SARKDLPGKFMLSYLPRDVVKHEFVTVNPEGFRFRGKLQYSSLAGLLKWFKINFRRAIPT
TPGMVSTRTPYMTGTTPNIMAVDPSTIQKVAQNLNPHMLHNLSQAATNTPYGGQTPGAFS
QGYSNYANTPYTPSGQTPFMTPYTTPGPSNTPRYGGSQTPSYNPGSRTPSHRPSGGMTPQ
HSRSVPSASSRSDQMDWKMAAAAWVQAKGGSSSNVGRTTPRHHDAGRTTPRYMEPRDSRY
QSSSGYSESAGRHTPRYGDRTPRSYHDYDNPRANSARSTPKTIHSPTNMSIGGDQTPLYD
E
NT seq
5586 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatttcatggatttggaagctgaggagagtgaggatgatgatgcagagtacaat
gaaaatgaaaaaaaaatgttgaagaaattgaaaacgtcaaaggttgtggactcttccgaa
gaagaagaagacgatgaggatatgatcagagaagaaaataaaggctttatcaatgatgac
gacgaggaagatgatgatgatgctggctctgattcggatagtgatggtgatactaaaggt
aaacgacggaagagagatgatgacgatgatgatgatctgaatggggataatctggatgat
gacgacttagatctcattgaagaaaacattggtgtaaaacttgaccggaaaaaaaaattc
aaacgtctgaagattgatgatgaagattcagatgcagaagcagatgtccaaggccagatt
aggagagacctgtttgagggatctggagatgaggaagaggacgaaggtggaacagggtcc
catgcaccgcagcagcacgaaacatacgcctcggaggaagaagatgaagattctgatggt
gagggcaacttcattgtggatgatgatggacagcccatctctaagcctaaaaggaaagga
ttgggtgacgaaggtctggaagctgcccgtgacatttttggttgtgacttcgattatgga
gaattcgatcagtatgaagactgggaggaaggtgaagaggacgaagaggatgaagatgaa
gactatgaagatgatgatgaggatggtagggaacgtcgtcgctctcgtaaggaaagaaag
acagtgaagaagtcgatctatgaggtatttgagccaattgaattggagcgtggccatctg
actgatcaagatcagcagattaggaagttggacataccagaaagattccagctaagacag
attccagtaacacgaactaggaatgaaggagatgatagggcttctgataaggagcttgat
caagaggccaaatggatttatcatcatgctttctataagccttttatttctaatcaggag
ggacgggaagaacgccggcatcgtcgtgatttcaacatgataaaaaagatctacaatgcc
ctggatttgatgagaaattctacgtgtgaagtcccttttattgcattctataggaaagag
gaagtccagccagaattgaatatccatgatctctggaaagtctatcgttgggatgaaaag
tggtgccagttgcaacgtcggaaggaaaatcttcgaactactttccagaagatgtcagag
taccaaggagacattattatgaaagaccttgatgctccgttaccagattctttccgtatg
ctgagtgaagaagatattgagaagatagaggaaattgagacatcagagcaattcaatgat
tgctacaaacagtttctcttgtattatgggaaggaccaaactgaaatgcgggcacacatc
aaggcaaaacagaaagaaaagagtagtacaactcgagtaacaagaacaattaaggtaatg
aaaaaagtcaaaagaaaaaagaagaaaaagaagaacttaatcatagaggatgatgatgaa
gatgaagtggaaaaagacaaggaaaaagaaagttccgaggcagacggagaatcaggagat
aaagaaaaggatgaagataaagagaaatctgaagatggtgctgacaaagaaaagagtgaa
gaagatgtggagaaggataaagaagataaggaaggagaagaaaatgatgtggacagcacc
aagaaaggcaaatcaaaagatgatgatgatgatgatgatacagaatcagaggaagaagtg
gagacagaggttgaggaggaagttgaagatgaagtccaggagccagaagaagatgcagag
gatttgaagaaggcagttcgtcgtcatgagtatgaattattaagaagagcaggtattgac
agtttggccaaaaagtttggtctcactcctgaacagtacagtcataatgttcgagacagt
tatcaacgttatgatgttgaacagtgtcaggaggagcctttgaaggaagcagaaaaatat
attaataagatgtgtagtactccagaaagagtgcttgaagctgctgtcaggatggttggt
tggcagttggcttgtgaacctttagtgcgaagaagtatacgcgagacctattttgaaagg
gccaaaatcaatatcagaccaactcctcatggcaagaagttgatagatgaacatcatcct
ttgtattcacttaaatatgttactagcaaacctgtgacagatttacaaggagaccagttc
ctacgccttaagtgtggtgttgaagacaagctagtaacagtttcctttgctgatactgtg
gaaggcaacacttcgaggaattatttagatgaacttaagcagctttattatcgagatgaa
ttttctaaaatagtacaggattggaatgaattgagaggtagagctgtaacttttgcctgt
aagcgtgttattgaggacttgaaaagagagctttcccagcgattgttagaggaagcaaaa
cttcatgttattgaacaatgttgcagtaaactttacaactggatcaaagtaggtccttac
aaccctggtgattttacagatgaagatgaagatgactgggatacttcaaaagggttccgt
gtgttttcaattgcctatgttccagatttgtcccaggctgcctttggtagctgtattgac
atagatggcgattgttgtgagtacattcgtctccctcacttgctcaaacgacgtgatgct
tacaatgaacgagatgccatggccaaggaaaatgacatccgtagaatacaagattttata
atgcgccggaagccacatgttgttgcagtaagtggcgagtctcgagaagctctgatggtg
caggaggatttggtacaaattctgaaagatttagaagagcaggaacaattccctaaaata
aatgttgagattattgataatgacttagctgatatttattccatatccaagaagggtgaa
gcagacttccttgattatcctcctctacttcgccaggcaatatctattggtcgcagggtt
caagacccattgattgaattctcacagctttgtaatccagatgatgagttgctcaattta
aagttccatcctctgcagtcacagataacagaagctgaacttctggatgcactgtacata
gaatttgttaatcgcacaaatgaagttggtgtagatttgaatcgtgctgtggcgtatcct
tacacacaaaatctggtgcaattcatttgtgggttaggtccacgaaaggcaaatcttctc
ttgaagacaatgaagcagaataaccagcgtcttgaaaacagaaatcaattggttgtgaac
ttccatatgggtccaaaagtatttattaactgtgcaggttttataaagattgacacaaat
gccttgggtgacagtgaaaattatattgaagttctagattctacgagaattcacccagaa
gcctacgactgggctagaaagatggctgtagatgccttagagtatgaagatgaagaaggc
aaaccagctgaagctctagaagaaattttggaaactcccgaccgccttagtgaacttgac
ctggaagcctttgctacagaacttcagaatcagggctttggcaagaaaaacaccacctta
tatgatatcaggcatgagttgaattatagatacaaagacttccgaactccttatcaatca
ccaactgcagatgaagtttttaatatgctgactaaagagtcacctgagaccttctatgtt
gggaagttagtgcaagtgacagttactaactttcttcatagaaaaccacgtggagatcaa
cttgacaatgccaatccagtcagaaacgaagataccggcctctggcaatgccccttctgt
ttaaagaatgactttccagaactcagtgaagtatggaatcattttgatgcgggagactgt
ccaggtcaagcaataggtataagagtgcgtctagataatgggatttctggttttatcaac
ataaaaaatttgtctgataagactgtcactaatcctgctgaaagagtaaaaagaaggggt
cttgttttatgtcgtatcatgaaaattgatcctgaaaagttttcagttgaacttacttca
cgtacgtcagatttgcaggatcgtgacaacaagtggaaagcaccaaaagacccatactat
gaccttcatttagaagaggaagatacaaatgttgatagacaaaagaaagagaaaaggaaa
acccaatatcagaaacgtgtcattgctcatcctgccttccgtaatatcgattacaatgaa
gcagaaaaagtgatgcaacaacttgaacagggagatgtcatcattaggccatctagtaag
ggaaatgatcaccttacagctacgtggaaagttaccgatggtatttgtcagcatattgat
attttagaacaggacaaacaaaatgatttctccttgggtcagaagctgtggattggcagt
gaagagtttgaagacttggatgaaatcattaccagacacattttaccaatggcaagcaat
gtacgtcagattttagaatataaatactacaaggaatctataatgggcaacaaggataaa
gcaaaggagtggttgtttatggaaaagaaaaaaactccaaagaacataccttatgttttc
tctgccaggaaagatctcccaggaaagtttatgctgtcatatctacctagagatgtagtt
aaacatgagtttgttactgtcaatcctgaaggttttaggtttagaggaaaattgcaatac
tcaagcttagctgggcttctgaagtggtttaaaataaatttccgtagagccattcccaca
accccaggtatggtatcaacacgtacaccttacatgacaggaacaactccaaacatcatg
gcagttgatccttcaacaattcagaaagtggctcagaacctcaatcctcacatgttgcat
aatctctcccaggcagccacaaatactccatatggtggccagactccaggtgccttctcg
caaggatattctaactatgccaacacaccttatacgccatctggtcaaacacctttcatg
acaccatataccacgcctggtccatctaacactccacggtatggaggatcacagacccca
tcctataaccctggaagtcgtactccatctcatcgtccatctggtggaatgactcctcaa
cattcacggtcagtgccctctgccagctcccgttcagaccaaatggattggaaaatggca
gcagctgcttgggtgcaggctaaaggaggcagcagtagtaatgttggaagaacgactccc
agacatcatgatgctggtagaactacgccacgttatatggagcctcgtgatagtaggtat
cagtcaagctctggatattctgaaagtgctggtcgtcacacaccaagatatggggatcgt
acaccaagatcataccatgattatgataatcctagggcaaattctgctcgctcaacccct
aaaactatccattctccaactaacatgagtatcggtggtgaccaaacacctctttacgat
gagtag
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