Candidatus Methylopumilus rimovensis: FIT61_02465
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Entry
FIT61_02465 CDS
T10495
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mrk Candidatus Methylopumilus rimovensis
Pathway
mrk03030
DNA replication
mrk03430
Mismatch repair
mrk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mrk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FIT61_02465 (dnaE)
03430 Mismatch repair
FIT61_02465 (dnaE)
03440 Homologous recombination
FIT61_02465 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mrk03032
]
FIT61_02465 (dnaE)
03400 DNA repair and recombination proteins [BR:
mrk03400
]
FIT61_02465 (dnaE)
Enzymes [BR:
mrk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FIT61_02465 (dnaE)
DNA replication proteins [BR:
mrk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FIT61_02465 (dnaE)
DNA repair and recombination proteins [BR:
mrk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FIT61_02465 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Porphobil_deam
Motif
Other DBs
NCBI-ProteinID:
QDD13325
UniProt:
A0AAE6FSG9
LinkDB
All DBs
Position
474016..477477
Genome browser
AA seq
1153 aa
AA seq
DB search
MSEAHPVSFIHLRCHSEYSITDGIVRIDDYVEKAFEENMPALALTDLNNVFGLVKFYKKA
REKGIKPILGADLWIENEINRDQPYRILVLCQNDKGYLALSEMLTRAYLENQYRGRAEIK
KSWLLEKNEGLIILSGGLMGDVGQAILQEHMDMAIHAMKDWATHFKNRFYIEIQRIAEGD
DKKNEARFINQSLNLAQSLEIPVVATQPIQFMDSDDYRAHEARTCIAEGYIMADHRRPKL
FSHEQYFKNENEMAALFADIPEALQNSVEIAKRCNFEFTLGKNYLPDFPTPNQEKLEDFL
ISESKKGSEVRLKELFPDESKRNEVREAYEARILFETSIINQMGFAGYFLIVADFINWAK
NNHVPVGPGRGSGAGSLVAFSLGITDLDPIQYQLLFERFLNPDRVSMPDFDIDFCQEGRD
RVIDYVKQKYGAGSVSQIVTFGTMAARAVIRDVGRVLDLPFNFVDGIAKLIPMELGITLQ
DALEKEPQLQDRYNKEEEVKELFDLALRLEGIVRNVGMHAGGVLIAPGKISNFTPIYCQA
NGDSLVSQFDKDDIEALGLVKFDFLGLRTLTILAMALKNANVLRANEQLPPLDLNHLPLD
DKTVFQLLKNANTTAVFQLESRGMKDMLKQAKPDCFEDIVALVALYRPGPMDLIPDFCKR
KHGQQRIVYPHPSTESILKETYGIAVYQEQVMQIAQTVAGYSLGAADLLRRAMGKKKQEE
MDAQREGFVAGSLKNGLNERQARELFDLLEKFAGYGFNKSHAAAYAMVAYQTAYLKTHYP
AAFLAASMSADMNNTDNIQIFFEDCKPNGVALLAPDINQSGFEFIPINTQEVLYGLGAIK
GTGLAAIELILASREKLGPFKNLFDFCARLDLRKVNRRVVESLIRGGAFDVLEPNRASLL
ASVNLAITAAEQGKANVGQNSLFSDEQTQSIDMVKVEPWTPQQKLQEEKAALGFYFSGHP
FTFLEKRVRPFIKTQIKELKPQEQPYLIAGVIVAIRIRMTARGKMAIVTLDDAISRVDVV
VGNELLTQSQRLVQEDQLLIVEGRVSHDDFTGGIRVTARKLFDLATARNQFAHHLKISCN
GQSDALKLRDILKPYCGASQNNLKRCRVKIDYHNEKGHVELILGQDWQVDLHDELIDGLT
QWLSEENVKILYN
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagctcatcccgtctcatttattcatttaaggtgtcatagcgaatactccatc
accgatggcattgtgcgcattgatgattatgtggaaaaagcatttgaagaaaacatgccg
gcgttagcgctcacggatttaaataatgtttttggtttggtgaaattttataagaaggcc
cgcgaaaaagggattaagcctattttgggcgcagacctttggattgaaaatgaaatcaat
cgtgatcagccttatcgcatattagtactctgtcaaaatgataaaggctatcttgcactc
tctgaaatgctcacacgcgcttatttagaaaatcaatatcgcggtcgagccgaaattaaa
aaatcttggttacttgaaaagaacgagggtctcatcattctctcaggcggtctcatgggt
gatgtgggtcaagcgatccttcaagaacatatggatatggccatacatgccatgaaggat
tgggcaacccactttaaaaatcgtttctatatcgaaattcagcgcatcgccgaaggggat
gataaaaaaaatgaagcacgttttatcaatcaatctttaaatctagcccaaagtttagaa
attcctgtagtcgcgacccaaccgattcaatttatggattccgatgattaccgtgcgcat
gaagcgagaacgtgtatcgctgaaggttacatcatggcggaccaccgtcgacctaaatta
ttttcacatgaacagtattttaaaaatgaaaatgaaatggcagctttgtttgctgatatt
ccagaagcgcttcaaaattcggtcgagattgcaaaacgttgtaactttgaatttacttta
ggtaaaaattatttacctgatttccccacccctaatcaagaaaagctcgaagacttttta
atttcagaatctaaaaaaggatcagaggttcgtttaaaagaactttttccagatgaatca
aaacgaaatgaagtaagagaagcgtatgaggcacgtatactttttgaaacgtctatcatc
aatcaaatgggttttgcagggtatttcttaattgtggctgactttattaactgggctaaa
aataatcatgtgcctgtgggccctggtcgaggatccggtgcgggatcgttagttgctttt
agtttagggattaccgatcttgatcccattcaatatcaacttctttttgagcggttttta
aatcctgatcgtgtctcgatgcctgactttgatatcgacttctgccaagagggccgagat
cgcgtgattgattacgtcaaacaaaaatatggtgccggttcagtctcacaaattgtgacc
ttcggtacgatggcagcccgcgcggtgattcgtgatgtgggtcgtgtacttgatcttcca
tttaattttgtcgatggcatcgcaaaattgatcccgatggaattaggcatcacgcttcaa
gatgccttagaaaaagaaccgcaacttcaggatcgctataacaaagaagaggaagtcaaa
gagctctttgatcttgcattaagactcgaaggtattgttcgaaatgtaggtatgcatgca
gggggtgtgttaatcgccccaggaaaaatttcaaacttcacacccatttattgccaggcg
aatggggatagtttagtcagtcaatttgacaaggatgatattgaggctttaggtttagtg
aagttcgactttttaggattacgtacactcactattctagccatggcattaaagaacgcg
aatgtattacgtgcgaatgaacaattaccaccgctcgatttaaatcacttaccactcgat
gataaaacggtcttccaacttttaaaaaatgcgaataccaccgctgtcttccaacttgaa
tctcgcggtatgaaagacatgttaaagcaagcgaagccggattgctttgaagatattgtg
gcgctcgtggcgctttatcgtccaggccctatggatttgattccagatttctgcaaacgt
aaacatggacaacaacggattgtgtatccccatccatcgactgaatctattttaaaagaa
acttacggtatcgctgtttatcaagagcaggtgatgcagattgcgcaaacggttgcaggt
tattcattgggtgctgcagatttattacgacgtgcgatgggtaaaaagaaacaagaggaa
atggatgcgcagcgcgaaggttttgtggcaggctcgttaaaaaatggactgaacgaaaga
caagcgcgtgaactttttgatttattagaaaaatttgcaggttatggatttaataaatca
cacgcagcagcttacgcgatggtggcgtaccaaactgcgtatttaaaaacacattaccct
gcagctttcttagccgcttcgatgtcggctgatatgaataacacggataacattcaaatc
ttttttgaggattgcaaaccgaatggtgtggcattattagcgcccgatattaatcaaagt
ggttttgaatttattccgattaatacccaggaagttttatatggattaggcgccattaag
ggcacagggttagctgcgatcgaacttattctagcgtctcgtgaaaaattaggccctttc
aaaaatctttttgatttttgtgcgaggcttgatttaagaaaagtgaatcgtcgcgtggtg
gaatctctcatccgtggtggcgcatttgacgtgttagagcctaatcgggcatcgttactc
gcgagtgtgaatttagcgatcacagccgccgagcaaggaaaagccaatgtgggacaaaat
agtttattcagtgacgagcaaacacaaagtattgacatggtcaaagtagaaccatggacg
ccccaacaaaaattacaagaagaaaaagcagcccttggattctattttagtggccatcca
tttaccttcttagaaaagcgcgtcagaccttttatcaaaacccagatcaaagaattaaag
ccgcaagaacaaccttatttaatagcaggcgtcattgtagcgattcgtatccgtatgaca
gctcgcggcaagatggcgattgtcaccttagatgatgcgatttctcgagtggatgttgtg
gtgggtaatgaacttctcacccaatcacaaagattggttcaagaagatcaacttttaatc
gtggaaggacgggtgagccacgatgatttcactggtggtattcgtgtcactgcccgaaaa
ctttttgatttagcgactgcgagaaaccaattcgcgcatcacttaaagatttcatgtaac
ggacaatcggacgcgcttaaattaagagacatcttaaagccttattgtggggcatctcaa
aataacctcaaacgctgccgcgttaaaattgactaccataacgaaaagggtcatgtggaa
ctcatcttaggtcaagattggcaggtggatttacatgatgaattgatagacggtttaacc
caatggttgagcgaagaaaacgtaaaaatcctttataattaa
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