Candidatus Methylopumilus rimovensis: FIT61_03850
Help
Entry
FIT61_03850 CDS
T10495
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mrk Candidatus Methylopumilus rimovensis
Pathway
mrk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mrk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FIT61_03850 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mrk03400
]
FIT61_03850 (mfd)
Enzymes [BR:
mrk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FIT61_03850 (mfd)
DNA repair and recombination proteins [BR:
mrk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FIT61_03850 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
ERCC3_RAD25_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QDD14157
UniProt:
A0AAE6FTX4
LinkDB
All DBs
Position
complement(760053..763463)
Genome browser
AA seq
1136 aa
AA seq
DB search
MQYMSIEANNQNKESLSIVNIDGSDSYSLARYIQDEIIKNKKYLAIFTETAFEARRLMEE
MLWFSPNLKINLLPDWETLPYDHFSPHPDLISERLLTLYQVTQKSFDVVIIPVTTALHLL
PPKSYIQQFSFHFAKGQKVDIEAFKNQLTLNGYMNVVRVMAPGEFSVRGSLIDLFPMGSI
VPYRLDFFDDEIDSIRTFDVDSQRTLYPVNEIKLLPARECPMDEKSISTFRQNYRERFEG
DPSRSSIYKDISKGIPIGGIEWYMPLFFDEMSDIFSYFSDNTIIYKHGNLDHACNHFWQE
TEKRFRLFAYDAERPILEPKDLLLKSDQFFKSINAYKKFDLKRPEIFEKIPDVSIDRKNI
QPLAKLDKFISENSKRIFILADSLGRRETVSELLKVGGIKFKSADDWSESLNMNDQVVLT
VSPVHQGYISSEHIVITESELYVNTVRQSKRRQRDKNFSSDAMVRDLSELKDGDPIVHEQ
YGVGRFRGLFNLDFGEGESEFLLLEYFGDDKLYVPVSNLDLISRYSGGPAETAPLHKLGS
DQWDKAKKKALKQIHDTAADLLNIYSQRSIKKGYAFKINLQDYERFTDGFPFEETEDQLT
AINAVINDMESQKPMDRLICGDVGFGKTEVALRAAFIAANDGKQVAILVPTTLLAEQHYN
NFMDRFSDSPIKIAEISRFKSKKEQAESLIKLANGEIDIIIGTHRLIQNDIKFKNLGLII
IDEEHRFGVRQKELLKAMRAEVDVLTLTATPIPRTLSMAMEGLREFSIISTPPQKRLSIK
TFVNNYSEGIIREAVLREFNRGGQVYFLHNDVDTILSMKEKLEKLIPEARIEIAHGQMRE
RELERVMHDFYQQKANILLCTTIIETGIDIPSANTIIMNRADMFGLAQLHQLRGRVGRSH
HQAYAYLLVDPDRKISGHAQKRLEAIQLLEDLGAGYYLAIHDLEIRGAGELLGDNQSGQM
HEIGFNLYVDMLNYAVKQLKLGKKLSLDNPLQKNTEINLHTPAIITNSYCGDINERLVLY
KRLSGLNDHEGLMEMKEELIDRFGVMPEQTQSLISFHDLRIFIQHLDIKKIDASDTSIQI
TFASDSKMDPLKLIKLLSEDKRCRMNGPDKIKIGVTIIDILERVKFIKDFLKKISI
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgcaatatatgtcaatagaagcaaataatcaaaataaagaatcattatcaatcgtaaat
attgatggctcggatagttattctttagctcgatatattcaagatgaaattattaagaat
aaaaaatatctagctatttttactgagactgcattcgaagcaagacgtctcatggaagaa
atgctttggtttagtccaaatttaaaaattaatcttttgcctgattgggaaacgctccct
tatgatcacttttctcctcaccctgatctaatatccgagagactccttacactctaccaa
gttactcagaaaagttttgatgtggttattatccctgtaacaactgcgctacatttattg
ccacccaagagttatattcagcaatttagctttcattttgccaaagggcaaaaagtagat
attgaggcttttaaaaatcaactaacactaaatggttatatgaatgtcgttcgcgtaatg
gctccaggcgagttttcagtgagaggcagtttaattgatttatttcccatgggaagcata
gttccatatcgtttagatttttttgatgatgagattgattctattcgaacattcgatgtt
gattcacaaagaacactttatcctgtaaatgaaattaaattacttcctgcgcgagaatgt
ccgatggatgaaaaatcaatcagtacatttagacaaaattatcgagaacgctttgaagga
gatccatctcgctcttcgatctataaagacattagtaaagggattcctataggcggtatt
gaatggtatatgcccttatttttcgatgagatgagtgatatttttagctatttctcggat
aacactattatttataagcacggtaaccttgatcatgcatgtaatcatttttggcaagaa
actgagaaacgctttcgattatttgcttatgatgccgaacgtccaatattagaacctaaa
gatcttttacttaaatcagatcaatttttcaaatctattaatgcatataaaaaattcgat
ttaaaaaggccagaaatatttgagaaaattccagatgtatcaattgatcgaaaaaatatt
cagcctttagcaaagcttgataaatttatctccgaaaactccaaaagaatttttatttta
gctgatagcttaggtcgccgagaaaccgtttctgagcttttaaaagtaggtggtatcaag
tttaaatctgcagatgattggtcagaatctttaaatatgaatgatcaagttgtattaaca
gtaagcccagttcatcaaggctatatttcatcagagcatattgtaattacagagtctgag
ctttatgtgaatactgttcggcaatcaaaaaggcgtcaacgcgataagaatttttcaagt
gatgcaatggtgcgtgacttatcagagctaaaagatggtgatccgattgttcatgaacaa
tatggtgtcggacgatttaggggattatttaatttagatttcggtgaaggtgaaagtgaa
tttttacttctagagtattttggtgacgataaactttacgttcctgtatctaatttagat
cttatctcccgctattctggagggccagcagaaaccgcgccacttcataagttaggttct
gatcaatgggataaagcaaagaagaaagctttaaaacagattcatgatactgcagctgat
cttctaaatatttattctcaaagatctattaagaaaggctatgcctttaagattaactta
caagactatgaaagattcacagatggattcccgtttgaagaaactgaagatcaattaaca
gcaatcaatgcagtcatcaatgatatggaatctcaaaagcctatggatcgtcttatatgt
ggtgatgtaggattcggtaaaacagaggtggcattaagagctgcctttattgcagcgaac
gatggtaaacaagtcgcaatattagtacctacaacacttcttgctgagcagcactacaat
aattttatggatcgtttttcagattcccccatcaagattgctgaaatttctcgttttaaa
tctaaaaaggaacaagctgagtcacttataaaattagcaaatggtgaaattgatatcatc
attggtacacataggcttattcaaaatgacattaaatttaaaaatttaggtttgattatt
attgatgaagagcaccgtttcggggtgcgccaaaaagaattacttaaggcaatgcgtgcg
gaagttgatgtcttaactcttacggcaacacctattcctcgaacactatctatggctatg
gaaggcttaagagaattttccataatttccacaccccctcagaaacgcttatcaattaaa
acattcgtaaataattattcggaaggcattattcgcgaagcagttttaagggaatttaat
cgaggcggccaagtttatttcttgcataacgatgttgacactattctttcaatgaaagaa
aaattagaaaaattaatacctgaagcaagaattgaaattgctcatggacaaatgcgagag
cgggaacttgaaagagttatgcatgatttttatcaacaaaaagctaatattttgctttgc
acaacaattattgaaacgggcatagatattccttcagcgaatacaattattatgaatcgc
gcagacatgtttggattagcgcaacttcatcaactgaggggtagggtaggaagatctcat
catcaagcatacgcttatttacttgttgatcccgacagaaaaattagtggccatgctcaa
aaacgattagaagctattcaacttttagaggatttaggggctggatattatcttgccatt
catgatttggaaattcgtggcgccggagagcttctaggggataatcaaagcggccaaatg
cacgaaattggattcaatctttatgtcgacatgttgaactatgctgttaagcaactcaag
ctaggcaaaaaattaagtctcgataatccactccaaaaaaataccgaaattaacctgcat
acaccagctattattacaaatagttattgtggtgatatcaatgaaagacttgtgctttat
aaacgattatcaggactcaatgatcatgaggggttaatggaaatgaaagaggagctgata
gatcgttttggtgtcatgcctgagcaaacgcaatcacttatttcttttcatgatttaaga
atttttattcaacatctcgacattaaaaaaatagatgctagtgacacttcaattcaaatt
acctttgcaagcgacagtaaaatggacccactaaagcttattaaacttctgagtgaggat
aagcggtgtcgcatgaatggcccggataaaattaaaataggtgtcacgattattgatatt
ttagaaagagttaaattcattaaagattttttgaaaaaaatttcaatctaa
DBGET
integrated database retrieval system
