Candidatus Methylopumilus rimovensis: FIT61_05675
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Entry
FIT61_05675 CDS
T10495
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
mrk Candidatus Methylopumilus rimovensis
Pathway
mrk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mrk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FIT61_05675 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrk03021
]
FIT61_05675 (rpoA)
03400 DNA repair and recombination proteins [BR:
mrk03400
]
FIT61_05675 (rpoA)
Enzymes [BR:
mrk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FIT61_05675 (rpoA)
Transcription machinery [BR:
mrk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FIT61_05675 (rpoA)
DNA repair and recombination proteins [BR:
mrk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FIT61_05675 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
QDD13913
UniProt:
A0AAE6FUB2
LinkDB
All DBs
Position
complement(1102713..1103699)
Genome browser
AA seq
328 aa
AA seq
DB search
MQNSPTEYLKPRIVNVEVINPVRARVTLEPMERGFGFTLGNALRRVLLSSIPGYAITEVK
IDGVVHEYSTLDGVQEDVVDILLNLKGVALKLHNKSETILTLNKTTEGPVTAADFETNHD
AEIINPNHLIAHLTKGGKLNLEVKVEMGRGYQPVPARRKSNQEDKTLGFIMVDASFSPIN
KVSYFVESARVEQRTDLDKLIMDVETNGVIDAEQAIRDAARILMGQLSVFANLESALTEV
EVKQAPQVDPVLLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKAPNLGRKSLN
EIKDVLASKGLTLGMKLENWPPAGLEKA
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatagtcctacagaatatttaaaaccaagaattgtaaatgttgaagttataaac
ccagtaagagctcgcgttactctagagcctatggaaaggggttttggctttactttaggt
aatgcattaagacgtgttttattgtcctcaattcccggctatgcaattactgaagtgaaa
attgatggcgtagttcatgaatattcaactttagacggtgtgcaagaagacgtagttgat
attctcttgaatttaaaaggtgttgcattaaagcttcataataaatctgagacaatcctt
acactaaacaaaactaccgaaggccctgtaacggctgctgattttgaaacaaatcatgat
gctgaaattattaatccaaatcatttaattgcgcatcttacaaaaggcggaaaattaaat
ctagaagttaaggttgaaatgggtagaggttatcaacctgttccagcaagaagaaaatca
aatcaagaagataaaaccttaggttttatcatggtagatgcttctttcagcccaatcaat
aaagtaagttattttgttgaaagcgctcgcgtagaacaaagaacagacttagacaaatta
atcatggacgttgaaactaatggtgttattgatgctgaacaagcgattagagacgctgct
agaattttaatgggacaactttctgtatttgcaaacttagaaagtgctttaactgaagtt
gaagtaaagcaagcgcctcaagttgatcccgtcttattaagacccgttgacgatctagag
ctcactgtaagatctgcaaactgtttaaaagcagaaaatatttattacattggtgatcta
attcaacgaagtgaaaatgagcttttaaaagctccaaatcttggaagaaaatcacttaat
gagattaaggatgttcttgcttctaaaggtttaactttgggtatgaagctagaaaattgg
cctccagcaggtttagaaaaagcgtaa
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