Candidatus Methylopumilus rimovensis: FIT61_05835
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Entry
FIT61_05835 CDS
T10495
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mrk Candidatus Methylopumilus rimovensis
Pathway
mrk03020
RNA polymerase
Brite
Enzymes [BR:
mrk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FIT61_05835 (rpoC)
Transcription machinery [BR:
mrk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FIT61_05835 (rpoC)
DNA repair and recombination proteins [BR:
mrk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FIT61_05835 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QDD13945
UniProt:
A0AAE6FTZ7
LinkDB
All DBs
Position
complement(1120711..1124955)
Genome browser
AA seq
1414 aa
AA seq
DB search
MKALLDLFKQVTQEEEFDAIKIALASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIDLASPVAHIWFLKSL
PSRLGMVLDIALRDIERVLYFEAFIVVDPGMTPLTRGQLLTEDDYLAKVEEFGDEFSAVM
GAEAIKELLKSLDINSEIEKLRTELAETGSEAKIKKIAKRLKVLEAFQKSGIKPEWMILE
ILPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLDLKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKVMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKKMALELFKPFIFHKLEVLGLSTTIKAAKKKVEEEGPEVWDILEDVIREHP
VLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRDKIAARGEGMKFTDVAEVHRAFDSG
LVDIHARVTVRIKETELGLDGTTTDKVNRYETTVGRAILSEILPAGLSFDLINKALKKKE
ISKLINAGFRRVGIRETVILADKLMYMGYTYATKAGISISIHDMLVPPEKEQLIEAAESE
VKEIEDQYISGLVTQGERYNKVVDIWGRAGDKVADAMMKQLKEEPVKNDAGENVKGKDGK
DLYQESFNAIYMMADSGARGSAAQVRQLAGMRGLMARPDGSIIETPITANFRDGLNVLQY
FISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVTEHDCGTEDGLVTKALVKGGEVV
EPLRDRILGRVNALDIMNPENQEVVYPKGTLLEEDHVEKIDALGIDEVKVRTALTCETRH
GICSQCYGRDLGRGKLISQGESIGVIAAQSIGEPGTQLTMRTFHIGGAVSRAASVSQVES
KSNGVIQFTSTMRYVTNARNEQVVISRNGELIIQDESGRERERHKVPYGANLVVQDGKPI
KAGGVLATWDPHTRPIISEYAGQVKFENVEEGITVAKQIDDVTGLSSLVVIDPKQRAGQS
KGLRPQIKILDTSGNEVKLAGSDISVNVTFQLGYIITVKDSQEVKVGDVIARIPQESSKT
RDITGGLPRVAELFEARSPKDAGMLAESTGTVSFGKDTKGKQRLVITDLEGVSKEFLIPK
DKHVTAHDGQVVTKGEVIVDGPADPQDILRLQGREALARYIIDEVQDVYRLQGVKINDKH
IEVIVRQMLRRVRITDAGDTSFIQGEQVERAEVLTENELVLSQDKKPAEYEYVLLGITKA
SLSTDSFISAASFQETTRVLTEAAILGKRDDLRGLKENVIVGRLIPAGTGLAYHETRKAA
AAGEDINSVEAPLDQIEAPIEEAQVSPEIEAPTE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttattagacctatttaaacaggttacacaagaagaagagtttgatgcaatt
aagattgcattagcatctccagaaaaaattcgttcatggtcttatggtgaagttaagaag
ccagaaacgattaattacagaacatttaaacctgaaagagatggtttgttttgtgcaaaa
atatttggacctattaaagactatgaatgtctttgcggtaaatataaacgacttaaacat
cgtggtgtaatttgtgaaaaatgcggtgttgaagttaccttgtctaaggtgcgtcgtgag
cgcatgggtcacattgacttagcaagtccagttgcacatatttggtttttaaagagtcta
ccaagtcgtttaggtatggtactcgatattgctttaagagatattgaacgtgttctttat
tttgaagcatttattgttgttgatcctggcatgactcctttaacaagaggacagcttctt
acggaagatgattaccttgcaaaagtagaagagtttggtgacgaattctcagcagtgatg
ggtgcagaagcaattaaagaattacttaaatcacttgatatcaatagtgaaattgaaaaa
ttaagaactgaattagctgaaacaggttcagaagcaaaaattaaaaaaattgctaagcgc
ttaaaagtgcttgaagcgttccaaaaatcaggtatcaaacctgaatggatgattttagaa
attcttcctgtactgcctcctgaattaagacctttggttcctctcgatggcggaagattt
gctacatcagaccttaacgatttgtatcgtcgagtgattaacagaaataatcgtttaaga
agactattagatcttaaagcaccagaaattattgttagaaatgaaaaacgtatgttgcaa
gaagcagttgactcacttcttgataatggtagacgtggcaaagtgatgacgggcgctaat
aaacgaccattaaaatctcttgccgacatgattaaaggtaagggcggtcgttttagacaa
aaccttctgggtaagcgcgttgattactctggtcgttcagtgattgttgttggaccacaa
ttaaaacttcatcaatgtggtttaccaaagaaaatggcgcttgaattattcaagccattt
attttccataaattagaagtcttaggcctttctacaaccattaaagcagcaaagaaaaaa
gtagaagaagaaggaccagaagtttgggatatcttagaggacgtcattagagagcaccct
gttttattaaacagagcaccaacattacatcgtttaggtattcaagcttttgaacctatt
ctgattgaaggtaaagctattcaattacatcccctagtttgtgctgcatttaacgccgac
tttgacggtgaccaaatggcagttcacgtacctttatctctagaggctcagatggaagca
agaaccttaatgcttgcatctaataacgttttatctcctgcgaatggcgaaccaattatt
gttccatcacaagatattgtgcttggtctttattatatgacacgagataaaattgctgca
cgtggcgaaggtatgaaatttactgatgtggcagaagttcatcgtgcttttgatagtggt
ttagttgatattcatgcacgcgtcacagttcgcattaaggaaactgaattaggtttagat
ggcacaactactgacaaagtaaatcgatatgaaactacagttggtagagcaatactttct
gaaattcttccagcaggactttcttttgatttaattaataaagcattaaagaaaaaagaa
atttcaaaattaattaatgcaggatttagacgtgttggtattagagagacagtaattctt
gctgataaattaatgtacatgggttacacctatgctacaaaagcaggtatctcaatcagt
attcatgacatgcttgttccaccagaaaaagaacagcttattgaagctgctgaatctgaa
gttaaagaaattgaagatcaatatatttcaggtctggtcacacaaggcgaaagatataac
aaggttgttgatatctggggtcgtgcaggtgacaaggttgctgatgcaatgatgaaacaa
cttaaagaagagcctgttaaaaatgatgccggtgaaaatgtgaagggtaaagatggtaaa
gatctttatcaagaatcatttaatgcaatttatatgatggctgattctggtgcgcgagga
tctgcagctcaagtaagacagcttgcaggtatgcgaggcttgatggcgagacctgatgga
tcaattattgaaacaccaattacagctaacttccgtgatggtttaaatgttcttcaatac
tttatttctacgcacggtgcgcgaaaaggtcttgcagatactgcattaaaaacagctaac
tcaggttatttaacacgacgtttagttgatgtgactcaggatcttgtggtgactgagcat
gattgcggcacagaagatggtttagttactaaagcacttgttaagggcggtgaagttgta
gagccattgcgagatcgtattttaggccgtgtaaacgcacttgatattatgaatccagaa
aatcaagaagtggtttatccaaaaggtacattacttgaagaagatcacgttgaaaaaatt
gatgcacttggtattgatgaagtcaaagtaagaactgcactgacttgcgagacaagacat
ggtatttgttctcaatgttatggtcgtgatttaggtcgtggtaaattaattagccaaggc
gagtctattggtgtgattgcggctcagtctatcggtgagcctggtacacaattgacgatg
agaaccttccatattggtggcgcagtttctagagcagcatcagtaagtcaagttgagagt
aaatcaaacggcgttattcaatttacttctacaatgcgatatgtaactaacgctcgaaat
gagcaggtagttatttcgcgtaatggtgaattaattattcaagatgaaagtggtcgcgaa
agagaacgtcataaagttccttatggtgcaaatcttgttgttcaagatggcaaaccaatt
aaggctggcggtgttcttgcaacttgggatccacatacacgtccaattatttctgaatat
gctggacaagttaaatttgaaaacgttgaagaaggtattacggttgcaaaacaaattgat
gatgtcacaggcttatcatctttagttgtaatcgatcctaagcagcgtgcaggccaatca
aaaggcttgagacctcaaattaaaattttagacacttcaggtaatgaagttaaattagca
ggaagtgatatatctgttaacgtaactttccagcttggttacatcattacagttaaagat
tctcaagaagttaaagtgggcgatgtgattgcgcgtattccacaagaatcttctaagaca
agagatattaccggcggtcttccaagagttgctgagttatttgaagcgagatctccaaaa
gatgcaggtatgttagctgaaagcacaggtacagtttcatttggtaaagacaccaagggc
aaacaaagacttgtgattacagatcttgaaggtgtttcaaaagaatttttaattcctaaa
gacaaacatgtgacagctcatgatggtcaagtggtaacaaaaggtgaagtcattgttgac
ggacctgcagatccacaagatattcttcgccttcaaggtagagaagctttagcaagatat
attattgatgaagttcaagatgtttatagattgcaaggcgtcaagattaacgataaacac
atcgaagtcattgtaagacaaatgttaagacgtgttcgtattactgatgcaggtgatact
tcatttattcaaggcgaacaagtcgaaagagctgaagtattaactgaaaatgaattggta
ttgtcacaagacaaaaaaccagcagaatatgagtatgtgcttttaggtattactaaagca
tcattatcgacagattcattcatttcagctgcttcgttccaagaaacaacccgcgttctc
actgaagctgcaattttaggtaagcgtgatgacctaagaggactaaaagagaatgtgatt
gttggtcgattaattcctgcaggtacaggcttggcttaccatgaaacaagaaaagctgcg
gctgctggggaagatatcaattctgttgaagccccactcgatcagattgaagctccaatt
gaagaggctcaagttagccctgaaattgaagcgccaactgaatga
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