Metabacillus rhizosphaerae: WCV66_03180
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Entry
WCV66_03180 CDS
T10831
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mrl Metabacillus rhizosphaerae
Pathway
mrl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mrl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WCV66_03180 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mrl03400
]
WCV66_03180 (mfd)
Enzymes [BR:
mrl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WCV66_03180 (mfd)
DNA repair and recombination proteins [BR:
mrl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WCV66_03180 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AhpC-TSA
Motif
Other DBs
NCBI-ProteinID:
WXB89276
LinkDB
All DBs
Position
complement(618517..622047)
Genome browser
AA seq
1176 aa
AA seq
DB search
MNSLQQYFYDTDDFKTIVSGIEEGLKEQLVAGLSGSARTVFTAALYNDLKKSVLIVTHNL
YQAQKIYEDLVHLIVEDVYLYPVNDLIASEIAIASPELKAQRIEVLNRLAEGKRSIIVAP
VAGVRRLLPPTEIWKDKQLKLTLGQDIDLEEYIQKFISLGYERTDMVSSPGEFSVRGGII
DIYPLTEENALRIELFDTEIDSIRSFNIDDQRSIHMLNEISIGPAIEMIVNEDSKARSIQ
AVEFGLAKSLKKMKNEQQKELLIENIQYDLERLRNGQFSQDIFKYSSLIYDKPTSLLDYF
SDNSIVILDEISRIHETYDQLDREEAEWYTSLLEDGKIFQDVKMSHSYVDVVTKSKHPLI
YLSLFLRHVPYTSPQNILNLSCKQMQNFHGQMNVLKNELDRWKKSNYAVVFLGVNEERTK
KLEQVLEDYEINATILGDKEALVSGKVCIIEGDLQTGFELPMQKLAVITEEELFKKRVKK
QVRRQKLSNAERIKSYSELEIGDYVVHVNHGIGKYLGIETLEINGIHKDYLNIRYQGSDQ
LYVPVEQIDQVQKYVGSEGKEPKIYKLGGSDWRRVKKKVESSVQDIADDLIKLYAEREAS
EGYAFSPDGEMQKEFELAFPYQETEDQIRSIQEIKKDMERLRPMDRLLCGDVGYGKTEVA
IRAAFKAIADGKQVALLVPTTILAQQHFETVRERFQEYPIKVGLLSRFRSRKEINETKKG
LSNGTVDMVIGTHRLLSKDVLYKDLGLLIIDEEQRFGVTHKEKIKQLKSNVDVLTLTATP
IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVRESIEREMARGGQVFFLYNR
VEDIERKAEEISMLVPDARVTYAHGKMTENELESVMLNFLEGEFDVLVSTTIIETGVDIP
NVNTLIVNDADKMGLSQLYQLRGRVGRSNRVAYAYFTHRKDKVLTEVAEKRLQAIKEFTE
LGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERQTDPTKEKAIEV
EIDLQVDAYLPQEYITDGRQKIDMYKRFRAITSLEELEELQEEIIDRFGEYPVEVSYLFQ
IARIKVFAIQERVELIKQDKDVINILIEEGASNKIDGHRLFELSNRYNRVVGLGMDGSRL
KLTIATKGLAVPKWLDIINELLNGLAQVKKEEMTLN
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
ttgaatagtttgcaacaatacttttatgatacagacgattttaaaacaatcgtttcagga
attgaagaaggattaaaggaacaacttgtagctggtttgtctggttcagcgagaacagtt
tttactgcagctctttataatgatttaaagaaatcagtgttaattgtcacacataacctt
taccaagctcaaaaaatatatgaggatttagtccacttaatagtggaagatgtttatcta
tatcctgtgaatgatttaattgcatctgaaattgccattgctagtccagagctaaaggct
caaagaattgaggttcttaatagacttgctgaagggaaacgttcaatcattgtcgcacca
gtggcaggggttagacgcttgcttccacctacagagatttggaaagataagcagttgaaa
ttgacactaggacaagatattgatctagaggaatatattcaaaagtttatttcacttggc
tacgaaagaactgatatggttagctcaccgggagaatttagtgttcgaggtggcataatt
gatatttaccctctaaccgaagaaaatgcacttcgcatagaactgtttgatacggagatt
gactccattcgttcatttaatattgatgatcaacgttcgatacatatgctgaatgagatt
tctattggacctgcaattgaaatgattgtaaatgaagattctaaagctagaagcatacaa
gcagtcgaattcggtttagcaaaaagtctaaaaaaaatgaaaaacgaacagcaaaaggaa
ttacttattgaaaatattcaatatgatttggaacgcctgcgtaatgggcaatttagccaa
gatatttttaaatattcctcgcttatctatgataagcctactagtttactagattatttt
tcagataactctattgtaatccttgatgaaataagtagaattcatgaaacatatgaccag
ttagacagagaagaggctgaatggtatacaagtctacttgaagatggaaagatttttcaa
gatgttaaaatgtcacattcctatgtggatgttgtgacaaaatccaagcatcccttaatc
tatctatcattattcttgaggcatgtcccttatacaagcccccaaaatatcttaaattta
tcatgtaagcaaatgcaaaactttcacggtcagatgaatgttttaaaaaatgaacttgat
cgttggaaaaaatcaaattatgctgttgtatttttaggggttaacgaggaacgtactaaa
aagttagaacaagttttagaggactatgaaataaacgcaactatactaggtgataaggaa
gcattagttagcgggaaagtttgcattatcgaaggagaccttcagactggtttcgagcta
cctatgcaaaagcttgctgtgatcactgaagaggagcttttcaaaaaaagagttaaaaaa
caggttagaaggcagaagctttctaatgctgaacgaataaagagctattccgaattggag
attggtgattatgtcgttcatgttaatcatgggataggtaaatatctcggtattgaaaca
cttgagattaatggaattcataaagattatttaaatattagatatcaaggtagcgatcaa
ttatatgtaccggttgagcaaatagaccaagtacaaaagtatgtaggatcagaaggtaaa
gaaccaaagatttacaagcttggtggaagtgactggcgtagagttaagaagaaagtagaa
tcatctgtacaagatatagccgatgatttaattaagctatatgcagagcgtgaggcgagt
gaagggtatgcgttttcacctgatggggaaatgcagaaggaatttgagttagcctttccg
tatcaagaaacagaggaccagattcgctctattcaagaaattaagaaggacatggagcgc
ctacgtccaatggaccgacttctatgtggtgatgttggttatgggaaaacagaagttgca
ataagagcagcgtttaaagccattgctgatggaaagcaggtcgctttgttagttccaaca
acaatcctggcacaacagcattttgagacagttcgtgagcggtttcaagagtatccaata
aaggtaggtctgctaagtcgctttagatctaggaaagaaattaacgaaacgaaaaaaggg
cttagtaatggaacagtagatatggttatcggtacgcacagactattatcaaaagatgtt
ttatataaagatttaggtttacttataatagatgaagagcaacgttttggtgtaacacac
aaagagaagataaagcagttaaagtcaaatgttgatgtactaacattaaccgctactcca
attcctagaactttacatatgtcaatgctaggggttcgagatttatctgttattgaaaca
ccgcctgaaaatcgttttccagtgcaaacatatgttgttgaatacaatggtgctcttgta
agagaatcaattgaacgagaaatggcacgtggcggtcaagttttctttttatataacagg
gttgaggatattgaaagaaaggcagaagaaatttctatgcttgtacctgatgctagggtt
acatatgcccatggtaaaatgacagaaaatgaactagaatctgttatgctcaatttcctt
gaaggtgagtttgatgttctcgtcagtacgacaattattgagactggtgtagatattcca
aatgtaaatacattaattgtaaatgatgcagataagatgggtttatcacagctttatcag
ctcagaggtagggttgggcgttcaaatcgtgttgcttatgcttatttcacacatagaaaa
gataaggttctaacagaagtagctgaaaaaaggcttcaagctattaaagaatttacagaa
ttgggctcgggatttaaaattgcgatgcgtgatctatcaattaggggtgcgggtaatttg
ttaggagcccaacagcacgggtttatcgattcagttggatttgacctttattcacaaatg
ctaaaagaagcaattgaagaaaggcaaacagatccaacaaaagaaaaagcaatcgaggtt
gaaattgacctgcaggtggatgcttatttaccacaagagtatattacagatggtcgtcaa
aaaattgatatgtataagcgttttagagctattacatcgcttgaagaattagaagaacta
caagaagaaatcattgacagattcggagaatatccagttgaggtttcttacttgttccaa
atagcacgaataaaggtatttgctattcaagaaagagtggagcttattaagcaagataaa
gatgtaattaatatactgatcgaagagggagcaagtaataaaattgatggtcataggctt
tttgaattaagcaatagatataaccgagtcgtaggactaggtatggatggtagcagactg
aagctaactattgctacaaaaggactggctgtcccaaaatggttagatattattaatgag
ttacttaatggcttagcacaagtgaaaaaagaggaaatgaccctaaattaa
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