Microbacterium resistens: K8F61_02960
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Entry
K8F61_02960 CDS
T07900
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mrn
Microbacterium resistens
Pathway
mrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K8F61_02960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrn03019
]
K8F61_02960
03009 Ribosome biogenesis [BR:
mrn03009
]
K8F61_02960
Enzymes [BR:
mrn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K8F61_02960
Messenger RNA biogenesis [BR:
mrn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K8F61_02960
Ribosome biogenesis [BR:
mrn03009
]
Prokaryotic type
rRNA processing factors
K8F61_02960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Rootletin
Motif
Other DBs
NCBI-ProteinID:
UGS28430
LinkDB
All DBs
Position
634142..636514
Genome browser
AA seq
790 aa
AA seq
DB search
MDDAPASTEDAVETTQAEADTSVETEATPAEADPSAEPESQPAEADPSAEPEAQTGGALT
AEGQNDPAEATGTPQDAAGEQQPEPEPEPEPERPVTAVSLGLLPEVFVSRVSTQLHFYAP
EIVPLPARPGRERDRDADEEQGGGSSSRRGRRRRGGGSDTDEQGGDQPRQRQRVVEYITE
PQRIKGSTRLEAKKQRRRDGRDAGRRRPVVTEAEFLARREAVDREMVVRSKNGRTQIAVL
EDNVLVEHYVARNQDASLIGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYSGEVDWDGVE
TGNQPRRIELALKPGDKVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPNGSMNGISRKL
PDTERARLKRILKEVLPESSGVIVRTAAEGATEDQLTRDVQRLTAQWEHIRGQVETQQAP
ALLHAEPDLLVKIVRDVFNEDFTKMLIQGADAGRTIRSYLESVAPDLLERVETYEDEVDP
FDAYRITEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGNLEETVTKNNL
EAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLSRDRTKHQVAEVTSLGL
VQMTRKKLGLGLLETFSEPCEVCAGRGIIVHHDPVVKHRAASSNGSGRRQRGGSASAAPA
AAPSPQGGTHAIPEGAKSALAQIAASTRAGGAAPVVADTAPVVPVEAERPKKARKKRPER
SKAPRTETEQLLDSVLDALPEPKAPGQGRARRRVTTAALSAGTAVVHTPGAPTGTDEGSA
PSVPGADAES
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
gtggacgacgcgccggcctcgacggaggacgccgtcgagacgacgcaggcggaggcggac
acctccgtcgaaaccgaggcgacgccggccgaggcggacccgtccgctgagcccgagagc
cagccggccgaggcggacccgtccgctgagcccgaggcgcagacgggcggtgcactgacg
gccgagggccagaacgatccggcggaggccacgggcacgccgcaggacgctgcgggagag
cagcagcccgagcctgagcctgagcctgagcccgagcggccggtgacggccgtgagcctc
ggtctccttcccgaggtgttcgtctcccgcgtgtccacgcagctgcacttctacgcgccc
gagatcgtgccgctcccggcgcgtcccgggcgtgagcgcgaccgggacgccgacgaggag
cagggcggcgggtcgtcgtcgcgtcgcgggcgccgccgtcgtggcgggggctccgacacc
gacgagcagggcggcgaccagccgcgtcagcgtcagcgggtcgtcgagtacatcaccgag
ccacagcggatcaagggctcgacgcgactggaggccaagaagcagcgccgccgcgacggt
cgcgacgcaggacgtcgtcggccggtcgtcaccgaggccgagttcctcgcgcgccgcgag
gccgtggaccgcgagatggtggtccgttcgaagaacggccgcacgcagatcgccgtgctc
gaggacaacgtcctcgtcgagcactacgtggcccgcaaccaggacgcgtcgctcatcggc
aacgtgtacctcggtcgcgtccagaacgtgctgccgagcatggaggccgcgttcgtcgac
atcggccgcggccgcaacgcggtgctgtactccggcgaggtggactgggacggcgtcgag
acgggcaaccagccccgccgcatcgagctggccctcaagcctggcgacaaggtgctcgtc
caggtcacgaaggacccggtcgggcacaagggcgcgcggctgaccagtcagatctcgctg
cccggccgctacctcgtctacgtgccgaacggctcgatgaacgggatctcgcgcaagctg
ccggacacggagcgggcgcgtctgaagcgcatcctcaaggaggtcctgccggagtcctcg
ggcgtcatcgtgcgcacggccgcggagggcgcgaccgaggaccagctcacgcgcgacgtg
cagcggctcaccgcccagtgggagcacatccgcggccaggtggagacgcagcaggccccc
gcgctgctgcacgccgagccggacctgctggtcaagatcgtgcgtgacgtcttcaacgag
gacttcacgaagatgctgattcagggcgccgacgccgggcgcacgatccgttcctacctg
gagagcgtggcgccggacctgctggagcgcgtcgagacctacgaggacgaggtcgacccg
ttcgacgcctatcggatcacggagcagatcgagaaggcgctggaccgcaaggtgtggctg
ccgtcgggcggctcgctggtgatcgaccgcaccgaggccatgaccgtcgtcgacgtcaac
accgggaagttcgtcggatccggcggaaacctcgaggagaccgtcaccaagaacaacctc
gaggcggccgaggagatcgtgcgacagctgcgtctgcgcgacatcggcggcatcatcgtc
gtcgacttcatcgacatggtgctggagtccaaccgcgacctcgtcctgcgccgcctggtc
gagtgcctgagccgggatcgcacgaagcaccaggtcgccgaggtgacctcgctgggcctc
gtccagatgacccgcaagaagctggggctgggccttctcgagaccttcagcgagccgtgc
gaggtgtgcgccgggcgcgggatcatcgtccaccacgacccggtggtcaagcaccgcgcg
gcgtcgtccaacggctccggccgtcgccagcggggcggctccgcctccgcggctccggcc
gccgcgccgtcgccgcagggcgggacccacgcgatccccgagggggcgaaatcggcgctc
gcgcagatcgccgcctcgacgcgcgcaggcggggcggcgccggtcgtcgccgacacggcc
ccggtcgtgcccgtcgaggcggagcgcccgaagaaggcgcgcaagaagcgccccgagcgc
agcaaggcgccgcgcaccgagaccgagcagctgctggactccgtgctcgatgcgctcccg
gagcccaaggccccgggccaggggcgtgcgcgtcgtcgcgtgacgacggcggcgctgtcc
gccggcacggccgtggtgcacaccccgggcgcaccgacggggacggacgagggctcagcc
ccgtcggtcccgggcgcggacgcggagtcctga
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