Mucilaginibacter robiniae: HH214_01635
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Entry
HH214_01635 CDS
T08554
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mrob
Mucilaginibacter robiniae
Pathway
mrob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH214_01635 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrob03019
]
HH214_01635 (rnr)
03016 Transfer RNA biogenesis [BR:
mrob03016
]
HH214_01635 (rnr)
Enzymes [BR:
mrob01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HH214_01635 (rnr)
Messenger RNA biogenesis [BR:
mrob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HH214_01635 (rnr)
Transfer RNA biogenesis [BR:
mrob03016
]
Prokaryotic type
tRNA degradation factors
HH214_01635 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
S1CSD-TOTE-2
RNase_II_C_S1
Rrp44_S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
QJD94661
UniProt:
A0A7L5DVB6
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All DBs
Position
351805..353943
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AA seq
712 aa
AA seq
DB search
MSKKKTTNHSIKQVLTQLVLDVFERNGKESLNYKQVSAMLNVREPEARDTILEILKEEAK
RGILKEISPGKFQVLELKTFVEGTVDMTNDGSAFIVTDDEFENDIFIAPRKLRNALNGDR
VKVYVYAKSKGKHKEGEVIEIIRRNKMEFTGIVKLSERFAFLIPDDRKMLHDIFIPLSDL
SGAKNGVKAIAEITDWPAEAKNPIGRIKNILGTQGENDTEMNAILAEYGFPLSFPDEVEK
ESEAIPEAITPEEIAQRRDFRDTLTFTIDPIDAKDFDDAISFKYLDNGNYEIGVHIADVS
HYIIPDSALDKEAFERGTSVYLVDRVIPMLPERLSNGLCSLRPNEDKLCFAAVFEMDAAG
KVLTEWYGKTIIHSNRRFSYEEVQQVIETSQGEYVQEIHQLNDLAYKLREQKFKNGAISF
ETTEVKFKLDEQGKPTGVYVKERKDAHKLIEEFMLLANRKVAEFVSKKGKGKRKYTFVYR
THDAPNPETLGNFAQFAARFGYKISTKSDRDIARSLNHLMHDVEGKKEQNVLTQLAIRSM
AKAIYTTKSTSHYGLAFDHYTHFTSPIRRYPDVMAHRLLFHYLNDGQSANAEHYEVLCKH
SSEKEKKAADAERASVKYKQAEYLKDHIGSIYTGVISGVTEWGMYVQITENNCEGMIRLR
DISDDFYTLDEKNYAIIGQRKKKVYQLGDEVRIKVKNVDLTKKQIDFSLVLD
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagaaaaaaacaaccaaccattctatcaaacaagtacttacccagctggtgctg
gatgtatttgaacgtaatggtaaagaatcattaaactataaacaggtttcggcgatgctg
aatgttcgcgagcccgaagcccgtgacactatactcgaaattttaaaagaagaagctaaa
agaggtattttgaaagaaatatcgcccggcaaatttcaggtactggaacttaaaaccttt
gtggaaggcacagttgatatgaccaatgatggatcggcctttattgtgaccgacgatgaa
tttgaaaatgatatttttattgccccacgtaagttacgtaatgccctaaatggcgaccgc
gttaaagtatatgtatatgccaaaagtaaaggtaaacataaggaaggtgaagtaattgaa
atcatccggcgcaataaaatggagtttaccggcattgtaaagctgtcggaaagatttgcc
ttcttgataccggatgatcgtaaaatgctgcatgatatcttcattccgttaagtgattta
agcggtgctaaaaacggagtaaaggccattgctgaaattaccgactggcctgccgaagct
aaaaacccgattggccgtattaaaaatatattaggtacacaaggcgagaatgataccgaa
atgaacgctattctggcagaatatggctttccgctttcctttcctgatgaagtagaaaag
gaatcggaagctataccagaagcgatcacgcccgaagaaattgcgcaacgtcgagatttt
agagacacgttaacttttaccatcgaccctattgatgctaaagacttcgatgatgccata
tcttttaaatatctggataatggcaattacgagattggcgtacacattgccgacgtatca
cactatatcatccccgattcagctttagataaagaagcctttgagcgtggcacttcggtt
tacctggtagatcgcgtaattccgatgctgcctgaacgtttatcgaatggattatgctct
ttgcggcctaatgaagataagctgtgttttgctgccgtatttgaaatggatgctgccgga
aaagtactaacagaatggtacggaaaaaccatcatccactccaatcgccgctttagctat
gaggaagtgcagcaagtaattgaaaccagccagggtgaatacgtacaggaaatacaccaa
ctgaatgatttagcctataaactgcgtgagcaaaagtttaaaaacggagccatcagcttt
gaaactactgaagttaaatttaagttggatgagcaaggcaagcctactggcgtttacgtg
aaggaacgtaaagatgcccataaactgattgaagaattcatgctgctggcgaatcgcaaa
gtagctgaatttgtaagcaaaaaaggcaaaggtaagaggaagtacactttcgtatatcgt
acgcacgatgcacctaatcctgaaactttaggcaacttcgcgcagtttgcggcccgcttc
ggttataaaatcagcaccaagtctgaccgtgatattgcccggtcgttaaaccatttgatg
cacgatgtagagggaaaaaaagagcagaacgtgctaacccagctagctatccgttctatg
gctaaagctatttataccaccaaaagcaccagccactatggtttagctttcgaccattat
acgcattttacctctcctatccgtcgttatccggatgttatggctcatcgcttattgttc
cattatctaaatgacggccaatcagctaatgctgaacattacgaggtactatgcaagcat
agttcagaaaaagagaaaaaagcggccgacgctgaacgtgcttcagtaaaatataaacaa
gctgagtacttgaaagatcatatcggtagtatttataccggtgtaatatcaggggtaaca
gaatggggtatgtatgtacagattaccgaaaataattgcgaaggcatgatcaggctgcgt
gatatatcggatgacttttataccttagacgagaaaaactacgccatcattggtcagcgg
aaaaagaaagtttatcagttgggtgatgaagtccggattaaagtaaaaaacgtagatctt
actaaaaaacagattgatttttcgttggtgctggattaa
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