Mucilaginibacter robiniae: HH214_14235
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Entry
HH214_14235 CDS
T08554
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mrob
Mucilaginibacter robiniae
Pathway
mrob03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mrob00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HH214_14235 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrob03021
]
HH214_14235 (rpoC)
03400 DNA repair and recombination proteins [BR:
mrob03400
]
HH214_14235 (rpoC)
Enzymes [BR:
mrob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HH214_14235 (rpoC)
Transcription machinery [BR:
mrob03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HH214_14235 (rpoC)
DNA repair and recombination proteins [BR:
mrob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HH214_14235 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QJD96943
UniProt:
A0A7L5E7V6
LinkDB
All DBs
Position
3191879..3196168
Genome browser
AA seq
1429 aa
AA seq
DB search
MSYKKDNKIKSNFTTITISLASPESILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHINLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDLIIYYERYVVIQPGIKEGDGISKMDFLTEEEYLDVLDTLPKENQYLDD
KDPQKFVAKMGAEALEELLRRIDLDQLSYDLRHQAANETSQQRKNEALKRLQVVEAFRDA
KNRIDNNPEWMIVKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLKLHECGLPKDMAAELFKPFIIRKMIERGVVKTVKSAKKIVDRKDP
LVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLVEGKAIQLHPLTCTAFNADFDGDQM
AVHVPLGNAAILEAQILMLASHNILNPANGTPITVPSQDMVLGLYYITKGRKTDEKRVVK
GQGLSFYSAEEVIIAYNEKKVDLHAFIKVKANVKERDGSIVNKLIETTVGRVLFNQHVPE
EVGYINELLTKKSLRDIIGDVVKNTGMARAAQFLDDIKELGFQMAFRGGLSFNLQDVNIP
AQKVDLIEQASKEVEEVMSNYNMGFITNNERYNQIIDIWTRINNRLTANVMEILSTDNQG
FNSVYMMLDSGARGSKEQIRQLAGMRGLMAKPQKSGSGGEIIENPILSNFKEGLSVLEYF
ISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVGETDCGTLRGIFTTALKDNEDIVE
PLYDRILGRTSLHDVFDPLTNEQLVAAGQDIDEDIAKKIENSPLEGIEIRSVLTCESKRG
VCALCYGRNLASGKRVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESQINAR
YDGIIEFENVRTVEFETPEDGTVDVVLGRSGEFRIIEPSSNKVIMTNNIPYGSYLYIKDG
SKITKGERICSWDPYNAVIISEFAGVVQFDAVLEGITFREESDEQTGHREKVIIDTRDKT
KNPVIQITERGEGVIKGYNIPVGAHIAVDEGERVQTGQVIAKIPRSTGKTRDITGGLPRV
TELFEARNPSNPAVVTEIDGVVSLGGVKRGNREITIESRDGQIKKYLVPLSKHILVQDND
FVKAGMPLSDGSISPADILAIKGPAAVQEYLVNGIQEVYRLQGVKINDKHFEVIVHQMMQ
KVSIEDPGDTRFLEREAVDSWDFSMENDEIFDKKVVVDPGDSNTLKAGQIVSLRRLRDEN
SVLKRKDMKLVEVRDAIAATSSPVLQGITRASLGTKSFISAASFQETTKVLNEAAIAGKR
DMMLGLKENVIVGHLIPSGTGLRDYDNIRVGSQEEFDRLMASKTEDVNA
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaggataataaaataaaaagcaacttcaccaccatcaccatcagtttg
gcctcaccagagtctatactggagcgttcaagcggtgaagttttaaaaccagaaaccatc
aactatcggacttacaaacccgagcgtgatggtttattctgcgaacggatttttggtccg
gttaaagattacgaatgccattgcggtaaatacaaacgtatccgttacaaaggcatcgtg
tgtgatcgttgtggtgtagaagtaacggaaaagaaagttcgtcgtgagcgtatgggccac
attaacttggtggttccagttgcgcacatttggtatttccgctcgttaccaaacaaaatt
ggttacctgctgggcttgccaaccaaaaaacttgacttaattatttactacgaacgttat
gtagtaattcagccaggtattaaagaaggtgacggaatttctaaaatggatttcttaact
gaagaagaatatctggacgtattggatactttaccaaaagaaaaccaatacttggacgat
aaagatccgcagaaattcgtagctaaaatgggtgctgaggcactggaagaattactgcgc
cgtattgacctggatcagttatcatacgatttacgccaccaggctgctaacgaaacttct
caacaacgtaaaaatgaagctttaaaacgcttacaagtagttgaggctttccgtgatgct
aaaaaccgtattgacaataatccggaatggatgattgttaaaattgttccggttattcca
ccagagttgcgcccgttagtaccattggaaggtggtcgtttcgctacttccgatttgaac
gatttataccgtcgtgttatcatccgtaacaaccgtttaaaacgtttgatcgagattaaa
gcaccggaagtaattttacgtaacgaaaaacgtatgctgcaagaagcggtagattcgttg
ttcgataactcacgtaaagttaatgcggttaaaaccgaaggtaatcgtgccctaaaatca
ctttcagatattttgaaaggtaaacaaggccgtttccgtcaaaacttattaggtaaacgt
gtggattactctgcccgttcagtaattgttgtaggtcctaacctgaaattacacgaatgc
ggtttaccaaaagatatggctgccgagttgtttaaaccgtttatcatccgcaaaatgatt
gagcgtggtgtggttaaaacagtaaaatcagctaaaaagattgttgaccgtaaagaccca
ttagtttgggatattctggaaaacgtattaaaaggtcacccagtgttactgaaccgtgca
cctacgctgcaccgtttaggtatccaggctttccagccaaaactggttgaaggtaaagcg
atccagctgcacccactaacctgtaccgcgttcaacgccgactttgacggtgaccaaatg
gctgtgcacgtaccactaggtaatgctgctattctggaagcccaaattttgatgttggct
tcacacaacattctgaaccctgctaacggtacaccaattactgtaccttctcaggacatg
gttttgggtctgtattatattactaaaggccgcaaaactgatgaaaaacgtgtagttaaa
ggccaaggcttatctttctactcggctgaagaagtaataattgcttacaacgagaagaaa
gttgacctgcatgctttcattaaagtaaaagctaatgttaaagaacgtgatggtagcata
gtaaacaagctgattgaaactactgtaggtcgcgtgctgttcaaccagcatgtacctgaa
gaagtaggttatatcaatgaattgctgactaaaaaatcactacgtgatatcatcggtgat
gtagttaaaaataccggtatggcccgtgctgcccagttcctggatgatatcaaggaatta
ggattccagatggccttccgtggtggcttatcattcaacttgcaggacgtaaacattccg
gcacaaaaagttgatttgattgagcaagcttcgaaagaagtggaagaggtaatgagtaac
tataatatgggtttcattaccaacaacgagcgttacaaccaaattatcgatatctggacc
cgtatcaacaaccgtttgacagcaaacgtaatggaaatcctgtcaaccgataatcagggc
ttcaactctgtttacatgatgctggattcaggtgctcgtggttctaaagagcaaattcgt
cagctggcaggtatgcgtggtttgatggctaaacctcaaaaatcaggttcaggtggtgaa
attattgaaaacccaatcttgtcaaactttaaagaaggtttgtcagtattggagtacttc
atttcaactcacggtgctcgtaaaggtttggcggatacagctttgaaaacagccgatgct
ggttacttgacccgtcgtttgcatgacgttgctcaagatatgattgtaggtgaaactgat
tgcggtacattacgtggtatcttcactacagcattgaaagacaatgaagatattgtagag
ccattatatgaccgtattttaggccgtacttcattacatgatgtgtttgacccacttacc
aatgaacaactggtagctgcaggtcaggacattgatgaagatattgctaaaaaaatcgaa
aactctccgttggaaggcatcgaaattcgctcggtattaacctgcgaaagcaagcgaggc
gtatgtgctttatgctatggccgtaacctggctagtggtaaacgagtacagaaaggtgag
gctgtaggtgtaattgctgcacaatccattggtgagccgggtactcagttaaccctgcgt
accttccacgtgggtggtactgcatcaaacatcgcggcagaatcacaaatcaatgctcgt
tatgatggtatcattgagtttgaaaacgttcgtaccgttgagtttgaaactcctgaagac
ggcactgttgatgtggttctgggtcgttcaggcgagttccgcattattgagccaagcagc
aataaagtaatcatgaccaataacatcccttatggttcatacctgtacatcaaagatggc
agcaaaattaccaaaggtgagcgtatctgttcatgggatccttacaatgctgtaattata
tcagagtttgcaggggttgttcagtttgacgccgtattagaaggtatcactttccgtgag
gagtctgacgagcaaaccggtcaccgtgaaaaagtaattatcgatacccgcgataaaacc
aagaacccggtaatccaaattactgaaagaggtgaaggtgttattaaaggttacaacatt
ccggtaggtgctcacattgctgttgatgaaggtgaaagagtacaaactggtcaggtaatt
gctaaaattccacgttcaactggtaaaacccgagatatcaccggtggtctgccacgtgta
actgagttgtttgaggctcgtaacccatctaacccggctgttgtaaccgagattgatggt
gtggtaagcttaggtggtgttaaacgtggtaaccgcgaaatcactatcgagtcgagagat
ggtcagattaaaaagtacctggttccattgtcaaaacacatcctggtacaggataatgac
tttgtgaaagctggtatgccactgtctgacggttctatatctccagctgatattttggct
attaaaggcccagctgctgtacaagaatacttggttaacggtattcaggaagtttaccgt
ttgcaaggtgtgaaaatcaacgataagcactttgaggtaattgtacaccagatgatgcaa
aaagtatctatcgaagatccaggtgatacccgcttcttggaaagagaagcagtagatagc
tgggatttctcgatggagaatgacgaaatctttgataagaaggtagttgttgatccggga
gattctaacactttgaaagctggtcagattgtgtctttacgccgcttgcgcgatgaaaac
tctgtgttaaaacgtaaggatatgaaactagtagaagttcgtgacgctatcgcggctact
tcaagcccagtattgcaaggtattacccgtgcatcattaggcaccaaatcgtttatctcg
gcagcatccttccaggaaactaccaaggttctgaacgaagctgctatcgctggtaagcgt
gatatgatgttaggtttgaaagaaaacgtaattgttggtcacttaattccgtcaggaacc
ggtttgcgcgattatgacaatattcgcgtaggttcacaagaagaatttgatcgcttgatg
gcttctaaaaccgaagatgtaaacgcgtaa
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