Mucilaginibacter robiniae: HH214_17330
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Entry
HH214_17330 CDS
T08554
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mrob
Mucilaginibacter robiniae
Pathway
mrob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH214_17330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrob03021
]
HH214_17330
03019 Messenger RNA biogenesis [BR:
mrob03019
]
HH214_17330
Transcription machinery [BR:
mrob03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HH214_17330
Messenger RNA biogenesis [BR:
mrob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HH214_17330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA_22
NACHT
AAA
OB_RNB
Mor
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
QJD97509
UniProt:
A0A7L5E5C8
LinkDB
All DBs
Position
complement(3946967..3948649)
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AA seq
560 aa
AA seq
DB search
MPETLELNDKLVSELRQIAKDLGVAEADELRKPQLIVRIKEQEQLIETARSQQSALDQNY
ATNDTPTDIAEAPADNAEKPRKRTRTLKTKTPAQPQAEAEEAGSDLFAAPEPIVQPESPT
TPIAQEETPVTTPAAPAPEVPAAKPAQEPRTPKFERERRPNNFKEGNNNNNNGQNQQQQK
PQEPPINLDFDNVIVNEGVLEIMPDGYGFLRSSDYNYLTSPDDIYVSQSQIKLFGLKTGD
TVRGSIRPPKEGEKYFPLVRVEAINGRIPAEVRDRVPFDHLTPLFPSERLNLFTDGGNYS
TRIMDLFSPIGKGQRGLIVAQPKTGKTMLLKDVANAIAKNHPEVYLIILLIDERPEEVTD
MARSVRAEVVSSTFDEPAERHVKIANIVLEKAKRMVECGHDVVILLDSITRLARAYNTVA
PASGKILSGGVDANALHKPKRFFGAARNIEDGGSLTIIATALTETGSKMDEVIFEEFKGT
GNMELQLDRKLSNKRIFPAIDITASSTRRDDLLLDRETLQRIWILRNHLADMNSQEAMEF
LLGQIKGTKTNEEFLISMNS
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaacactcgaactgaatgacaagcttgtgtctgagttgcgccaaatagccaaa
gacttaggtgttgctgaagccgatgagttgcgtaaaccacagttaattgttcgtattaaa
gaacaagaacaattgattgaaacagcccgctcacaacagtctgctttagatcaaaactac
gctactaacgatacccctactgatatagcggaggcccctgccgataatgcagaaaagccc
cgtaaaagaactcgtactttaaaaactaaaacgcctgcccagccacaagcggaagctgaa
gaagctggtagcgatttatttgcagcaccagagcctattgttcagcctgaaagtccgaca
acgccaattgcacaggaagaaactccggtaactactccagcggcaccagcaccagaagtg
ccggctgctaaacctgcacaagagcctcgtacacctaagtttgagcgcgaacgtaggcct
aataattttaaagaaggtaataacaacaataataacggccaaaatcagcagcaacaaaag
ccgcaggaaccacctataaatttagattttgacaatgttattgttaatgaaggcgtattg
gaaattatgcctgatggttacggctttttgcgctcttctgattataattacttaacttct
ccggatgatatttatgtatcacaatcgcaaatcaaattatttggtttaaaaactggtgat
acagttagaggaagcatacgcccacctaaagagggtgaaaagtatttcccgctagtacgt
gtagaagccattaacggccgcataccagctgaagtgcgcgaccgtgtacctttcgatcac
ttaacaccacttttcccatctgaaaggttaaacttgtttaccgatggcggcaactactca
actcgcattatggatttgttctcgcctattggtaaaggacagcgtggcttgattgtagcc
cagccaaaaaccggtaaaaccatgttgttgaaagacgtagccaatgctattgctaaaaac
cacccggaagtttacctgattatactgctgattgatgagcgccctgaagaggtaactgat
atggcccgcagcgtacgtgccgaagtggtatcatcaacttttgatgaacctgccgaacgc
cacgttaaaattgccaacattgtgcttgaaaaagccaaacgtatggtagagtgtggccat
gatgtggttatcttactcgattcaatcactcgtttagcacgtgcttataatacagtagcg
ccagcatcaggtaaaattttatcaggtggtgtggatgctaatgcattgcataaacctaaa
cgcttttttggtgcagcccgtaatattgaagatggcggctcgctcaccattattgctact
gcccttaccgaaaccggctctaaaatggatgaggtaatttttgaagagtttaaaggtacc
ggtaatatggagttgcaactggatcgtaaattatccaacaaacgtatattcccggctatt
gatattactgcttccagtacccgccgtgatgatttactgttagatcgcgaaacactgcaa
cgtatctggatactaagaaatcacttagctgatatgaactcacaggaagctatggagttt
ttattgggtcaaattaaaggcactaaaaccaacgaagaattcctgatttccatgaattct
taa
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