Methylocystis rosea: EHO51_00600
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Entry
EHO51_00600 CDS
T05721
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mros
Methylocystis rosea
Pathway
mros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHO51_00600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mros03019
]
EHO51_00600
Messenger RNA biogenesis [BR:
mros03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EHO51_00600
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AZG75362
UniProt:
A0A3G8M2K1
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Position
141714..143384
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AA seq
556 aa
AA seq
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MTTPDADLVFVPLGGLGEIGMNMALYGYGPPKARKWLMVDCGLGFPGPEAPGVDLVFADI
AFVEKIARDLVGICITHAHEDHIGGLATLWPRLKCRVFATPFAAGLLEVRRLNEPGAPKI
DISLTHAGAKLDLDPFQVEYVAVAHSIPEANALAIRTPLGLLLHTGDWKIDPQPGVGTRI
DEARLRALGDEGVTALICDSTNILREGDSFSEADVARTLRTLIAEAPGRVLVTTFASNIA
RLRGIGEAAQACGRTVVVAGRAMDRAIQVARDCGYLDGLPGFHAPELLPTLPRDKTVVIA
TGSQGEYRAAMARAAVNEHPAIKLVAGDRVIFSSRVIPGNARDVFRVINALCDIGVEVIT
DHDHLVHCSGHPRRGEVRQMYEWIRPQIAVPAHGEAHHLTAHAAFAKSHGVSQVVSARNG
DIVRLAPGAPGIIGKAPHGRLMKDGDVVLTEDDGAVRDRLRLSATGVISIALAVDRKGEL
VGDPDVVFAGVPKRGKFGEEMGEVIDEALFAAFEGLSRPRRRDADAVSKAIERAVRGAVS
SVWGKKPTVHVMVVAT
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgccggacgcggacctcgtcttcgtgccgctcggcggcttgggcgaaatcggc
atgaacatggcgctctacggctacgggccgccgaaagcgcgcaaatggctgatggtcgac
tgcggcctcggatttccgggacccgaggcgcccggcgtcgacctcgtcttcgccgacatc
gccttcgtcgagaagatcgcgcgcgatctcgtcggcatttgcatcacccatgcgcatgag
gatcatatcggcgggctcgcgaccttatggccgcggctcaaatgcagggtgttcgccacc
ccctttgcggcgggcctccttgaagtgcggcggttgaacgaacccggcgcgccgaagatc
gacatttccctgacgcatgccggcgcaaagctcgatctcgatccgttccaggtcgaatat
gtcgcggtcgcgcattcgattccggaagcgaatgcgctcgcgatccgaacgccgctcggc
ctgctgctccacaccggcgactggaagatcgatccgcagcccggcgtcgggacgcgcatc
gacgaggcgcggctccgcgcgctcggcgacgagggcgtcacggcgctcatctgcgactcg
accaacatcctgcgcgagggcgacagtttttcggaagccgacgttgcgcgcacgttgcgc
acgctgatcgccgaagccccgggccgggtgctggtcacgaccttcgcgtccaatattgcg
cggctgcgcggcatcggcgaagcggcgcaggcctgcgggcgcaccgtcgtcgtcgccggg
agggcgatggatcgcgccatccaggtcgcgcgagattgcggctatctcgacgggctcccc
ggatttcacgcgccagaattgctgccgaccttgccgcgcgacaagaccgtcgtcatcgcg
accggaagccagggcgagtaccgcgccgccatggcccgggcggcggtgaacgaacatccg
gcgatcaagcttgtcgcgggcgatcgggtgatcttctcctcgcgcgtcattccgggaaat
gcgcgcgacgtctttcgcgtcatcaacgctctttgcgacatcggcgtcgaggtcatcacc
gaccacgaccacctcgtgcattgctccggccatccgcgccgcggcgaagtcaggcaaatg
tacgaatggatccggccgcagatcgccgtgccggcccatggcgaggcgcatcatctcact
gcgcatgcggccttcgccaagtcgcatggcgtttcgcaggtcgtctcggcgcgcaatggc
gacatcgtaagactggcgccgggcgcgccgggcatcatcgggaaggccccgcacggccgt
ctgatgaaggatggcgacgtcgtcctgaccgaagacgacggcgccgtgcgtgaccgcttg
cgcctctctgccaccggcgtcatttccatcgcgctggcggtcgaccgcaagggcgagctt
gtcggcgatccggacgtcgtcttcgctggggtgccgaaacgcggcaaattcggcgaggag
atgggcgaagtcattgacgaggcgctctttgcagctttcgagggactgtcgcgtccgcgg
cgccgcgacgccgacgccgtttcaaaggcgatcgagcgcgccgttcgcggcgccgtatcg
tccgtctggggcaagaagcccacggtgcatgtgatggtcgtggccacctga
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