Methylomonas rapida: NM686_002105
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Entry
NM686_002105 CDS
T08781
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
mrp
Methylomonas rapida
Pathway
mrp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NM686_002105 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrp03019
]
NM686_002105 (rhlB)
Enzymes [BR:
mrp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NM686_002105 (rhlB)
Messenger RNA biogenesis [BR:
mrp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NM686_002105 (rhlB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WAR45328
UniProt:
A0ABY7GLG8
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All DBs
Position
complement(450944..452272)
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AA seq
442 aa
AA seq
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MKKTHLTETRFSNLELSDSIIKGLKEAGFIHCTPIQDKALPLALRDKDVAGQAQTGTGKT
ATFLLATFQRLINDESEKIKNPRALILAPTRELAIQIHKDAVLLSQCLNLKFALIYGGTD
YQKQLDKLKGNVDIIIGTPGRIIDFYKQGAFTLDNIQVSVMDEADRMFDLGFIKDIRFLL
RRMPPPEKRLNLLFSATLSYKVTELAYEHMNNPVMVKIETEEVTSKSINQFAFCPANEQK
IPLLLGLLKSHQPVRSIVFVNTKRCAEQLDDYLKANGYKAAMLSGDVPQEKRQRLLNDFQ
EDRVNLLIATDVAARGLHIPDVSHVFNYDLPQDVEDYVHRIGRTARFGASGEAISFICEE
YAYSMPDIEDYIGEKIPVEPITPDLLLEEVIKPQRREPRERVAPHGKRPPRGDRRPPREF
KGPRPVPAPASSPENPPQPETP
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaacacatttgacggaaacgcgttttagcaatctggagttgtccgactccatc
atcaagggcttgaaagaagccggtttcattcactgcacccccatccaggacaaagctctg
ccgttggcgctgcgggacaaggatgttgccggccaggcgcagacgggaaccggaaaaacc
gccacttttttgttggccacttttcaacgcctgatcaacgatgaaagcgaaaaaatcaag
aatccgcgcgcgttgattctggcgcccacgcgcgaactggcgatccagattcacaaggat
gccgtactattgagccaatgtctgaatctgaaatttgcgctgatttatggcggcaccgac
tatcaaaaacagctcgacaagctcaagggcaatgtcgacatcatcatcggcacgccggga
cgcatcatagacttttacaaacaaggcgccttcacgctggacaatatccaggtgtcggtg
atggacgaagccgaccgcatgttcgacctgggcttcatcaaggacattcgcttcttgctg
cgccgcatgccgccgccggaaaagcgattgaatctgctgttttcggcgaccttgtcctac
aaagtcaccgaactggcctacgagcacatgaacaacccggtgatggtgaaaatcgaaacc
gaggaagtgacgtccaaatccatcaaccagtttgccttctgcccggccaacgagcagaaa
attccgctgttgctcggcttgctgaaatcccaccaaccggtacgcagcatcgtcttcgtc
aacaccaagcgctgcgccgaacaactggacgattacctgaaggccaacggctacaaggcg
gccatgctcagcggcgacgtaccgcaagaaaagcgccagcgtctgctcaacgattttcag
gaagaccgggtcaacttgttgattgccaccgacgtggcggctcgcggtctgcatattccc
gacgtttcgcatgtgttcaattacgatttaccgcaagacgtggaagactacgtgcatcgc
atcggccgtaccgcccgcttcggcgccagcggcgaggcgatcagcttcatttgcgaggaa
tatgcctactcgatgccggacatcgaggactatatcggcgaaaaaatcccggtggaacca
attacgccggacttattgctcgaagaggtcatcaaaccgcaacgccgcgaaccgcgcgag
cgagtagccccccatggcaaacgcccgccccgtggcgaccgcaggccgcccagggaattc
aaaggccctcgcccggtaccagccccggcatcatcgcccgaaaatcctccacagccggaa
actccgtaa
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