Methylomonas rapida: NM686_002115
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Entry
NM686_002115 CDS
T08781
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mrp
Methylomonas rapida
Pathway
mrp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NM686_002115 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrp03021
]
NM686_002115 (rho)
03019 Messenger RNA biogenesis [BR:
mrp03019
]
NM686_002115 (rho)
Transcription machinery [BR:
mrp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NM686_002115 (rho)
Messenger RNA biogenesis [BR:
mrp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NM686_002115 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
S1CSD-TOTE-2
Mor
Spore_III_AA
AAA_22
AAA
ResIII
Motif
Other DBs
NCBI-ProteinID:
WAR45330
UniProt:
A0ABY7GLE8
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All DBs
Position
452878..454134
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AA seq
418 aa
AA seq
DB search
MNLTELKLKQVSEIISIAESLGLEGIDRARKQELIFAILKKQAKSGEDIFGDGVLEILQD
GFGFLRTPGCSYLAGPDDIYVSPSQIRRFGLRTGDTVSGKIRPPKEGERYFAMLKVESIN
FESPEHAKNKISFSNLTPLFANKRFRLEQGNGTSEDLTARIIDLIAPIGKGQRGLIVSPP
KAGKTMIMQSIAHAIAEKNPECYLIVLLIDERPEEVTEMERCVRGEVVSSTFDEPATRHV
QVADMVIEKARRLVEHKHDVVILLDSITRLARAYNMVVPSSGKLLSGGVDANALEKPKRF
FGAARNIEEGGSLTIIATALVETGSRMDEVIYEEFKGTGNMELHLERKIAEKRIYPAINI
NRSGTRREEYLVDPDELQKTWILRKILQPMDELAASEFLLGKLKDFKTNAEFFDSMKR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgagctaaaacttaaacaagtcagtgaaattatttccatagccgaatcc
ctgggcctcgaaggtatcgacagagcccgaaagcaagagctcatctttgccattctgaaa
aaacaggcaaaaagtggcgaagacatattcggtgacggggttttggaaatactgcaggac
ggttttgggtttttacggacgcctggttgctcttatttggcgggtcccgacgatatttat
gtgtctcccagtcagatcagacgcttcggtttgcgcaccggcgataccgtcagcggcaag
atacggccgcccaaggaaggcgagcgttactttgcgatgctgaaagtggaaagcatcaat
ttcgaatcccccgagcacgccaagaacaagatttctttttccaacctgaccccgctgttc
gccaacaaacgtttccgtctggaacaaggcaacggcaccagcgaagacttgaccgcccgc
atcatcgatttgatcgcgccgataggcaagggccagcgcggtttgatcgtgtcgccgccc
aaagccggtaagaccatgatcatgcaaagcatcgcccatgcgatagccgagaagaatccg
gaatgttatctgatcgtactattgatcgatgaacgtccggaagaggtgacggaaatggaa
cgctgcgtgcgcggcgaagtggtttccagtacgttcgacgagccggccacgcggcacgtg
caggtcgccgacatggtcatcgaaaaagcccggcgtctggtcgaacacaaacacgacgtg
gtcattttgttagactcgattacccgtttggcgcgggcttacaacatggtggtgccgtca
tccggcaagctgttgtccggcggtgtcgatgccaatgcgctggaaaagcccaagcgcttt
ttcggtgcggcccgaaacattgaagaaggcggcagtttgaccatcatcgccaccgcgctg
gtggaaacggggtcgcggatggatgaggtaatctacgaggaattcaagggtaccggcaac
atggagttgcacctggaacgcaaaatcgccgagaaacggatttacccagccatcaacatc
aaccgctcaggtactcgccgcgaggaatacttggtcgatcccgacgagttgcaaaaaacc
tggattttgcgaaaaattttgcagccgatggacgaactggcggcatcggaatttttgttg
ggcaaactcaaggatttcaaaaccaacgccgagtttttcgattcgatgaagcgctag
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