Methylomonas rapida: NM686_002235
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Entry
NM686_002235 CDS
T08781
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mrp
Methylomonas rapida
Brite
KEGG Orthology (KO) [BR:
mrp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mrp03032
]
NM686_002235 (topA)
03400 DNA repair and recombination proteins [BR:
mrp03400
]
NM686_002235 (topA)
Enzymes [BR:
mrp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NM686_002235 (topA)
DNA replication proteins [BR:
mrp03032
]
Prokaryotic type
DNA Topoisomerases
NM686_002235 (topA)
DNA repair and recombination proteins [BR:
mrp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NM686_002235 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
WAR45353
LinkDB
All DBs
Position
484296..486614
Genome browser
AA seq
772 aa
AA seq
DB search
MSKSLVIVESPAKCKTIEKYLGKDFQVLASYGHVRDLIPKEGAVDPDNGFAMKYQVIDRN
QRHLQEIAKALKGADTLYLATDPDREGEAISWHVYEHLKEKKLLKDKDVRRVVFHEITKK
AVTEAIAHPTELSTNMVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRMIV
EREMEIEAFKTQEYWSHTADASAQGQPFKAKLTHFNGEKLSQFSITDAERANQVKQALLG
AGDGQLIVAKLEKKQRSKNPAPPFITSTLQQEAARKLGFTTKRTMMVAQQLYEGIDLGGE
TVGLISYMRTDSVNLADEAVADIRALIAEKYGPENVPKEPRQFKTKSKNAQEAHEAIRPT
SVQRLPEQVKNRLSIEQYKLYDLIWKRTVACQMMHATLNLVAVDLNCGSDKNVFRATGST
VTNPGFMMVYLEGVDDSSEAADDQDRLLPPMEEGRPVVLNDITANQHFTEPPPRYSEASL
VKALEEHGIGRPSTYAAIISTLQNREYVTIDSKRFYPTDVGRIVNKFLTEHFTKYVDYGF
TANLEDDLDAVARGEKDWIPLMNDFWRPFTQLISEKEDSVQRKDVTQESIDEKCPECGSP
LSIRLGRNGRFIGCTNYPACSYTRNLGEDNAAATNEPEVVEGRVCPKCASTLVIKTGRYG
KFIGCSAYPTCKHIEPLEKPQDTGVECPQCKKGSILKRKARSGKIFYSCSEYPKCDYALW
DAPIKEECPDCHWPILTLKTTKRRGTEKVCPQKECKYATPYEGDPNDVNGPS
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaagtttagtcattgtagagtctcccgctaaatgcaaaaccatcgaaaaatat
ctgggcaaggattttcaggtgctggcctcgtacggccatgtccgtgatctgattcccaaa
gaaggcgcggtcgatccggacaacggttttgcgatgaaataccaggtcatagaccgtaat
caacgtcatctgcaagaaatcgccaaagccttgaaaggcgccgacaccctgtatctcgcc
accgacccggacagggagggcgaggcgatttcctggcatgtgtacgaacacctgaaggaa
aagaaattattgaaggacaaggatgtgcggcgcgtggtgtttcacgagatcaccaaaaaa
gccgtcaccgaggcgatagctcatccgaccgaattgtccaccaacatggtcaacgctcag
caagcgaggcgggcgctggattatctggtgggcttcaatctgtcgccgttgctgtggaaa
aagatacgccgtggcttgtcggcggggcgggtgcagagcccggcgctcaggatgatcgtc
gagcgggaaatggaaatcgaggctttcaaaacccaggaatactggtcccacacggcggat
gccagcgcgcaggggcagccgttcaaagccaagctgacgcatttcaacggcgagaaactc
agccaattcagcatcaccgacgcagagcgtgccaatcaggtcaagcaggccttgctgggc
gccggcgatgggcaattgatcgtcgccaagctggagaaaaaacaacgcagtaaaaatccg
gcgccgccgttcataacctcgaccttgcagcaggaggccgcgcgcaagctgggctttacc
accaaacgcacgatgatggtggcgcagcaattatatgaaggtatcgacctcggcggcgaa
accgtgggtctgatttcgtatatgcgtaccgattcggtgaatctggctgatgaggctgtc
gccgatattcgcgcgttgattgccgagaaatacgggcctgagaatgttcccaaggaaccg
cggcaattcaagaccaaatccaagaacgcccaggaggcgcacgaggcgattcggccgacg
tcggtgcagcgtttgccggagcaagtcaaaaaccgtctgtcgatagagcaatacaagctg
tatgacttgatctggaagcgcacggtcgcctgtcagatgatgcatgccacgctgaacttg
gtggcggtcgatttgaactgcggtagcgataagaacgtgtttcgcgccacggggtctacc
gtgaccaatccgggtttcatgatggtttatctggagggcgtggatgacagcagtgaagcg
gccgatgatcaggacaggttattgccgccgatggaagaagggcggcccgtggtattgaac
gacattacggccaatcagcattttaccgagccgccgccccgctatagcgaggccagtctg
gtgaaggcgttggaagagcacggcatcggccggccttcgacctatgcggcgatcatctcg
accttgcagaatcgcgagtacgtgacgatagacagcaagcgtttttacccgaccgacgtc
gggcgtatcgtcaacaagtttttgaccgagcatttcaccaagtacgtcgattatggtttt
accgccaatctggaagacgatttggatgcggtggcgcgtggcgaaaaagactggattccg
ttgatgaacgacttctggcggccattcacgcaattgatcagcgagaaggaagattctgtc
cagcgcaaggatgtcacgcaggaaagcatagacgaaaagtgccccgaatgcggtagccct
ttgtcgatccggctggggcgcaatgggcgtttcatcggctgcaccaattaccccgcttgt
tcctatacccgtaatttgggcgaggacaacgcggctgccacgaatgagccggaagtggtg
gagggacgggtttgtccgaaatgtgcgtcgacattggtcatcaagaccggtcgctacggc
aagttcatcggctgcagcgcttatccgacttgcaagcacatcgaaccgctggaaaagccg
caggataccggcgtcgaatgtccgcaatgcaaaaagggttcgatactgaagcgcaaggcg
cgtagcggcaagatattttattcctgttcggaatatcccaaatgcgattacgcgctgtgg
gatgcgccgatcaaggaagaatgtcccgattgccactggccgattctgaccttgaagacc
accaagcggcgcggcaccgaaaaggtctgtccgcaaaaggaatgcaaatacgcaacgccg
tatgagggcgatcctaacgacgtcaatgggccgagttga
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