Methylomonas rapida: NM686_009085
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Entry
NM686_009085 CDS
T08781
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mrp
Methylomonas rapida
Pathway
mrp03030
DNA replication
mrp03430
Mismatch repair
mrp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mrp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NM686_009085 (dnaE)
03430 Mismatch repair
NM686_009085 (dnaE)
03440 Homologous recombination
NM686_009085 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mrp03032
]
NM686_009085 (dnaE)
03400 DNA repair and recombination proteins [BR:
mrp03400
]
NM686_009085 (dnaE)
Enzymes [BR:
mrp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NM686_009085 (dnaE)
DNA replication proteins [BR:
mrp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NM686_009085 (dnaE)
DNA repair and recombination proteins [BR:
mrp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NM686_009085 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Bac_A_amyl_C
HROB
CcmE
Motif
Other DBs
NCBI-ProteinID:
WAR46651
LinkDB
All DBs
Position
1930775..1934263
Genome browser
AA seq
1162 aa
AA seq
DB search
MNPTFVHLRIHTEFSLVDGIVRIKPLVKKLADFGMPAAAVTEQSNLFSLVKFYKAAQGAG
IKPIAGADVLVYNDDEPATPYRLTLLARNKQGYVTLTELVSQAYQQGQHQGVPMLQKAWI
AENHQGLIVLSGAMEGDVGQALLAENPEQAKNCALYWSELFQDSFYLELQRVGKFDEERY
IKLAVELATELDLPVVATNDVRFLGKSDFEAHEVRVCIHQGRVLDDARRPKNYTEQQYLR
SPEEMAELFADIPEALENSVEIAKRCNVELTLGENYLPDFPVPEGMTLADYFKQASREGL
EERLKQHPPVGKGSFEENRKVYDERLEIELNVITQMGFPGYFMIVADFIQWAKNNDIPVG
PGRGSGAGSLVAYALKITDLDPIEFDLLFERFLNPERISMPDFDIDFCMERRDEVIDYVA
RHYGRDHVSQIITYGSMAAKAVIRDVGRVMGHAYGFVDRLAKLIPFEIGMTLDKALKESP
DLKALYDTEEEVKQLINMARSLEGISRNAGKHAGGVVISPTKLTDFSPLYCEQGGGNLVT
QFDKDDVEAVGLVKFDFLGLRTLTIIDWALQTINCQRAQRGEPPVDISQIPRDDPASYEL
LKNAQTTAVFQLESSGMKALIKKLKPDCFDDIIALVALFRPGPLESGMVDDYINVKHGAK
AEYAHPLLEPILKPTNGVILYQEQVMQIARDMAGYTLGGADMLRRAMGKKKPEEMAKQRE
IFTEGAIKNNIDQGIATYIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHYPAAFMAA
VMSSDMDNTDKVVVLIEECREMKLQICPPDINLSDFRFTVNDKGQIVYGIGAIKGVGENA
IEDLLSERNANGPFAGLYDLCKRVDLRKVNRRVLEALVKAGALDAIDPNRAAHLAELTTA
LKVAEQHGKMALAGQNDLFGLGDEESADGDAEAYSTAIEPWSEKEKLEAEKQTLGLFLTG
HPIAEYLPELKHITHGTLGGLEADASRVKGKMEARVAGLVVELRTRQTKQGKMMGFATLD
DRTGRLEVAAFSGIFDKYRDLLSKDTVLIAEGSLSVDDFSNSLRMTAEKLYGMEEAREMF
ARGIVLEWNSSSWSSQRPFAEELREILLPFRGGQCPITIEYTNNTAKATVQLGDDWRVHP
SDELLIRLRRFLSPEAVSVRYK
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgactttcgtccatcttaggatacacaccgaattttcattggtcgacggtatc
gtccgcatcaagccgctggtcaaaaaactggcggatttcggcatgccggccgcggcggtc
accgaacagagcaacctgttctcgctggtcaagttttacaaggccgcccaaggtgccggc
atcaagccgatagccggggccgacgtgctggtttataacgatgacgagcccgcaacgccg
tatcgcttgaccctgcttgcccgcaacaaacaaggctatgtgacgctgaccgaattggta
tcgcaagcctatcagcaaggccagcatcaaggtgtgcctatgttgcaaaaggcgtggata
gctgaaaatcatcagggcttgatcgtgttgtcgggtgctatggaaggcgatgtcgggcag
gccttgctggcggaaaaccccgaacaggcgaaaaattgcgccttgtactggagtgaactg
ttccaggacagtttttatctggaactgcagcgggtcggcaagtttgacgaggaacgctat
atcaaactggcggtggagttggcgaccgaactggatttgccggtcgtggcgaccaatgac
gtgcgtttcctcggcaaaagcgacttcgaagcccacgaagtcagggtgtgcatacaccaa
ggccgcgtgttggacgatgcgcgccgaccgaagaattataccgagcagcagtatctacgc
agcccggaggaaatggccgaactgttcgcggatattccggaggccctggaaaacagcgtc
gaaatcgccaaacgctgcaatgtcgagctgacgctgggtgaaaactatttgccggatttt
ccggttccggaaggcatgacgctggcggattatttcaagcaggcctcgcgcgaaggcttg
gaagaacgcttgaagcagcatccgccagtcggcaagggcagcttcgaggaaaaccgcaag
gtttacgacgagcgtctggagatcgagctaaacgtcattacacagatgggctttcccggt
tatttcatgatcgtggccgacttcatccaatgggcgaagaacaacgacattccggtcggt
ccaggtcgggggtcgggtgccggctcgctggtagcttacgcgctgaagatcaccgaccta
gaccccatcgaattcgatttgctgttcgaacgcttcctgaatccggaacggatttccatg
ccggacttcgatatcgacttttgtatggagcgccgagacgaggtcatcgactacgtcgcg
cgccattacggccgcgatcatgtttcgcagatcatcacctatggctcgatggcggccaag
gccgtaattcgagacgtcggtcgcgtcatggggcacgcctatggcttcgtcgaccggctg
gccaagctgattccgttcgagatcggcatgaccttggacaaggctttgaaggaaagccca
gacctgaaagctctgtacgataccgaggaagaagtcaagcagctgatcaacatggcgcgc
tcgctggaaggcatttcccgtaacgccggcaaacacgccggcggggtcgtgatttcacca
accaaactgaccgacttttcgccgctgtattgcgaacagggcggcggcaacctggtgacc
cagttcgacaaggacgacgtcgaggcggttggcctggtcaagttcgactttttgggactc
agaaccctgaccatcatcgattgggcgctgcagaccatcaactgccagcgcgcgcaacgt
ggcgagccgccggtcgatattagtcagattccgcgcgacgatcccgccagttacgagctc
ttgaaaaacgcccaaaccacggcggtgttccagctcgaatccagtggcatgaaggccttg
atcaaaaagctcaaacccgactgcttcgacgacatcatcgcattggtcgcgctattccgc
ccagggcctttggaatcgggcatggtggatgattacatcaacgtcaaacacggtgccaag
gctgaatatgcccatccgcttttggagccgattctgaagcccaccaatggcgtcatcctg
taccaggaacaggtgatgcagatcgcccgcgacatggcgggatacacgctcggtggtgcc
gacatgctgcggcgggcgatgggtaagaaaaagcccgaggaaatggcgaagcagcgggag
atcttcaccgagggggcgatcaagaacaacatcgaccaaggcatcgcgacctatatcttc
gacttgatggaaaagttcgccggctacggtttcaacaagtcgcactcggccgcctacgcg
ctggtggcttatcaaaccgcctggctaaaggcgcattacccggccgcattcatggcggcg
gtgatgtcgtcggacatggataacaccgacaaggtcgtggtgttgatcgaagaatgccgg
gaaatgaaactgcagatttgcccgcctgacatcaatctgtccgattttcgttttaccgtc
aatgacaaaggtcagatcgtctacggtataggtgcgatcaagggcgttggtgaaaacgcg
atcgaggacttgctgagtgagcgtaatgcgaacggaccttttgccggcttgtacgacttg
tgcaagcgcgtcgatttgcgcaaagtcaaccgcagggtattggaggccctggtcaaggcc
ggcgcgctggatgctatcgaccccaatcgagccgcgcatctggccgaactgacgaccgcg
ctgaaagtggccgaacagcacggcaaaatggcattggccgggcagaatgatttgttcggt
ttgggggatgaggaatcggctgacggcgacgcggaagcctactcgaccgcgattgaaccc
tggagcgaaaaagaaaaactggaagcggaaaagcaaacgctcggtttgtttctgaccgga
caccccatcgccgaatatctgccggaattgaagcacattactcacggcaccttgggcggt
ctggaggctgatgccagtcgggtaaaaggcaagatggaagcgcgcgtcgccggtctggtc
gttgagttgcgtacccgccaaaccaagcaaggcaagatgatggggtttgccaccttggac
gaccgcaccggccgcctggaagtggcggcattcagcggcatcttcgacaaatatcgcgat
ctgctgtcgaaagatacggtgctgatcgcggaaggctccttaagcgtggacgatttcagc
aacagcttgcgcatgaccgcggaaaagctctacggtatggaagaggcgcgggaaatgttc
gcccgcggtatcgtactggagtggaattccagttcatggtcatcgcagcgtccgtttgcc
gaagagctacgggaaatactcctgccttttcgcggcggccaatgccccatcaccatcgaa
tacacgaacaacaccgcaaaagccactgtgcagttgggggatgactggcgcgtgcatccc
agcgatgaattgctgattcgcttacgacgattcctgtcgcccgaggccgtatcggttaga
tataaataa
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