Methylomonas rapida: NM686_015175
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Entry
NM686_015175 CDS
T08781
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
mrp
Methylomonas rapida
Pathway
mrp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mrp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NM686_015175 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mrp03400
]
NM686_015175 (recB)
Enzymes [BR:
mrp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NM686_015175 (recB)
DNA repair and recombination proteins [BR:
mrp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NM686_015175 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_25
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
WAR43712
LinkDB
All DBs
Position
3222815..3226495
Genome browser
AA seq
1226 aa
AA seq
DB search
MTSATAIDPLVLPLSGTRLIEASAGTGKTYTIAALYVRLILGHGMQGSELLPPDILVVTF
TDAATKELRERIRARLTQAARYFRDSSMESDDFLQRLRADYAAEQWPNCARRLELAANWM
DEAAVYTIHSWCNRMLQQHAFDSGSLFKQEVDSDDQELLHQVVRDYWRQFFYPLSATACL
AVNKLAASPEQLAAILKPLLFETEAAGLNCETDDIRPVFEAWEQWQRQCDVLENQARQHW
LSQQTALEALLQLASNDGWLNGNQYRKNTFADKLKHMAAWAQGATLGLDDLAKFGRQKLQ
AGLTKAHQNKIDQFQQTTFQAIDDFIAHCEQEIDIADSITRHAIQWLRARYDAEKQRIAR
MTFDDMLNRLDSALRSQNGERLAATIIKQYPIALIDEFQDTDPVQYRIFARLYPADAEEE
FGCFMIGDPKQAIYSFRGGDIFTYLKAHQATLGKHYTLGTNYRSTESLVAAVNRMFAHAD
QQQAEGAFYFKHDEFDPLPFIPVAAKGRNEVFVIEQESAPALTFWRLDGEQAIGMPDYRV
QMAAATASEIVRLLTGGQKGHTGFRDAQGQMAPLQPADIAILVRSGSEARIMRQALAERR
LRSVYLSERESIYASPEAKDILIWLRALAEPRDERKVRAALSTATIGWPYQTLRRLTLDE
PLWESQLERFIGYQQRWQQDGILPTLRQLLSDYALSARFAALADGERRLTNLLHLAELLQ
HAGSHLDGEQALIRHLAETIASSEQAAEENVIRLESDANLIKIVTIHKSKGLEYPLVFLP
FICSFREVGGRNTRYYRYHDPDFNLSIDLSKSDECKAISDKERLQEDLRLLYVAVTRARY
ACWLGVAAIKSGNSKNSLLHKSALGYVLGWQPDMAASELQSRLSELKGDCAAIAIENPPA
ATAMPYQPPHAETEIDAARDSTIKVGDNWWIASYTALQTEQITAGKPASAPSEAENYRED
KQGDEAEPLPNPPMQAASGLHGLPRGAEPGVLVHELLEQCALLGFGAVLAQPELALPLID
KLFKGHNWENKQNILAQALQQWLKLPLLADTGISLSDLASHRYQAEMEFLLGAEAADVRL
IDTLVTRHTFAGLARPRLQANQIHGLLKGFIDLVFVHEDRYYVLDYKFNALGTNSDAYGD
AALQNAMLNKRYDLQSMLYLLALHRLLKTRLGERYDYDSHIGGSIYLFLRGVDNASAGRV
FYKPDKTLIEALDALFRGETMPGLVA
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcgccaccgccatcgatccgctggtattgccgctgtctggcacgcgcctgatc
gaagcaagcgccggcaccggtaaaacctataccatcgccgcgctctatgtacgcttgatc
ctcggccacggcatgcaaggcagcgagctattgccgccggacatcctggtggtgacattc
accgacgcggccaccaaggaactgcgcgaacgcatacgcgcccgtttgacccaggcagcg
cgctatttccgcgacagttcgatggaaagcgacgactttctgcagcggctgcgcgctgac
tatgccgcagaacaatggccgaactgcgctcgccgcttggagctggccgccaactggatg
gacgaagccgccgtttatacgatacacagctggtgcaatcgcatgctgcaacagcacgcc
ttcgacagcggcagcctgttcaagcaagaagtcgatagcgacgaccaggaattattgcac
caggtagtcagggactattggcggcaatttttttaccccttatccgccaccgcctgtctg
gccgtgaacaaactggcagcgtcacccgagcaactggccgccatcttgaaaccgctgctg
ttcgaaaccgaagccgccggattgaattgcgaaacagacgacatccggccggttttcgaa
gcgtgggaacagtggcaacgccagtgcgacgtcctggaaaatcaagcccgccaacattgg
ctgagtcagcagacagcgctcgaagcgcttttgcaactagcctcgaacgacggctggctc
aacggcaatcaatatcgaaaaaatacctttgccgacaaactcaagcacatggccgcctgg
gcgcagggcgccacgctaggcttggatgacttggccaaatttggccggcaaaagctgcaa
gcgggcttgaccaaagcccatcaaaacaaaatcgaccagtttcagcaaacgacctttcag
gccatcgacgatttcatcgcgcattgcgaacaggaaatcgatatcgccgattcgattacc
cgccacgccattcaatggctgcgggcacgctacgacgccgaaaaacagcgtatcgcccgc
atgactttcgacgacatgctgaatcggctggattcggccttgcgaagccagaacggcgaa
cggctggccgctacgatcatcaaacaatatccaattgcactgatcgatgaatttcaagat
accgatccggtgcaataccgcattttcgcgcgcttgtacccggccgatgccgaggaagaa
ttcggttgtttcatgataggcgacccgaaacaggcgatttattccttccgcggcggcgat
atttttacttatctcaaagcccatcaagccacattgggcaagcactacaccctgggcacc
aattaccgctcgaccgaaagcctggtagccgccgtcaaccgcatgtttgcccatgccgac
cagcaacaagccgaaggcgccttttacttcaagcatgatgagttcgatcctttgccgttc
atcccggtagcggccaagggccgcaacgaggttttcgtcatcgagcaagaatccgccccc
gcgctaaccttttggcggctggatggcgagcaagccatcggcatgccggactatcgcgtg
caaatggcagccgcgacggccagcgaaatcgtgcgcctgttgaccggcggccaaaaagga
cacaccggctttcgcgacgcgcagggccagatggccccgttacaaccggctgacattgcg
attctggtgcgcagcggcagcgaagccagaatcatgcgtcaggccctggcggaacggcga
ctgcgtagcgtttacctgtccgagcgcgaatcgatatacgccagcccggaagcaaaagac
atattgatctggctgcgcgcattggcggagccgcgcgatgagcgtaaggttcgcgcggcc
ctgagcaccgcgaccataggctggccctatcagaccttgcggcgactgacgctggacgaa
cctctctgggagtcgcaactggaacgttttataggctatcaacaacgctggcaacaggat
ggcattttgccaaccctgcggcaattactgagcgattacgccctgtccgcccgttttgcc
gctctcgccgacggcgaacgccgcttgaccaatctgttgcatttggccgaactgttgcag
catgccgggagccatctggacggcgagcaagccttgatccggcatttggcggaaaccata
gccagcagtgaacaagccgccgaggaaaacgtgatccggctggaaagcgacgccaatctg
atcaaaatcgtgacgatccacaaatccaagggcctggaatatccgttggtatttttgccg
ttcatctgtagtttccgggaagtaggcggccgcaacacccgttattaccgttatcacgac
cccgacttcaacctgagtatcgacttgagtaaaagcgatgagtgcaaagccatcagcgac
aaggaacgcctgcaggaagatttgcgcctgttgtatgtggcggtcacccgcgcccgttac
gcctgttggctgggcgtggcggccatcaagtccggtaacagcaagaacagcctgttgcat
aaaagcgcgctgggctatgtgctaggctggcagcccgacatggcggccagcgaactgcaa
agccgcttgagcgagctcaagggcgattgcgccgccatcgccatcgaaaatccgccagcg
gccactgccatgccctaccagccgccgcacgcggaaaccgaaatcgatgccgctcgcgac
tcaaccatcaaggtcggcgacaattggtggatagccagctacacagccctgcaaaccgag
caaataacggctggcaaaccagcaagcgccccaagcgaagcggaaaattatcgcgaagac
aaacagggcgacgaggcggaacccttgcccaaccctcccatgcaggcggcatcaggcctg
catggcctgccgcgcggagccgaacccggcgtcttggtacacgaactgctggaacaatgc
gcgctgctcggttttggcgcggtgctggctcagccagaactagcgctgccattgatagac
aaattattcaagggacataactgggaaaacaaacaaaacatcctggcgcaggctctgcaa
caatggctgaagttaccgctattggccgacaccggcatcagcctgtcggatttggcaagc
caccgctatcaagccgagatggagtttttgttgggtgcagaggcagccgacgttcggctc
atcgatacgctagtcacgcggcacacctttgccggccttgccagaccgcgcctacaagcc
aaccaaatccatgggcttttaaaaggcttcatcgatttggtgttcgtgcatgaagatcgc
tattacgtgctggattacaaattcaatgccctgggcaccaacagcgacgcctatggcgac
gccgcattgcaaaatgccatgctgaacaaacgctacgatctgcaatcgatgctttatttg
ttggccttgcatcggctactgaaaacccggctgggcgaacgttacgattacgatagccat
atcggcggcagtatctatttgtttctacgcggcgtggacaatgcgagtgccggccgggtg
ttttacaagcccgacaaaacactgatcgaagccctcgatgcgctgttccgcggcgaaacg
atgccggggctggtagcatga
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integrated database retrieval system
