Methylomonas rapida: NM686_018160
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Entry
NM686_018160 CDS
T08781
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mrp
Methylomonas rapida
Brite
KEGG Orthology (KO) [BR:
mrp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mrp03016
]
NM686_018160
Enzymes [BR:
mrp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NM686_018160
Transfer RNA biogenesis [BR:
mrp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NM686_018160
Prokaryotic type
tRNA splicing ligases
NM686_018160
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
GSu_C4xC__C2xCH
Motif
Other DBs
NCBI-ProteinID:
WAR47085
UniProt:
A0ABY7GRH4
LinkDB
All DBs
Position
complement(3859086..3860453)
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AA seq
455 aa
AA seq
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MRVPAVIYADASLLRDMDQKVYEQITNVASLPGIVEAAYAMPDAHWGYGFPIGGVAAFDP
DQGGVVSAGGVGFDISCGVRTLHTGLQLADVRPYKQQLADALYKAIPAGVGSKGRIHLNH
DLMHGMLTGGAQWALEQGWGEDSDLERMEEGGRMVGAVASYVSPKARERQKDEMGTLGSG
NHYLEVQRVAEVYDQHVANVFGLRVDDVVISIHCGSRGLGHQIGTEFLRDMAIAASQYRI
DLPDRELACAPLTSPLGKQYLGAMRAAINCALANRQIITHLTRDAVKTVFPGVHLGLLYD
VSHNTCKLEQHAINGQKKALFVHRKGATRAFGPGHPDLPAVFRQVGQPMLIGGSMGTSSY
VLCGTQESEKRAFNSACHGAGRAMSRHQATKQWQGSALVDDLADRGIIIRSPSLRGVAEE
APGAYKDVSVVVDVADRAGLARKVAQLEPLICIKG
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgtgccggcggtgatttatgccgatgcctcgctactgcgcgacatggatcaaaag
gtttacgagcaaatcaccaatgtcgcaagtttgcctggaatcgtcgaggcagcctatgcg
atgccggacgcgcattggggttacggctttccgatcggtggcgtcgcggccttcgatccg
gaccaaggcggtgtggtgtcggctggcggcgtaggattcgacatttcctgcggcgtccgc
accctgcataccggtttgcagcttgcggacgtgaggccgtacaaacagcagttggccgat
gccctgtacaaagccattccggcgggtgtcggcagcaagggccggatacatttgaatcac
gacctcatgcatggcatgttgaccggcggtgcgcagtgggccttggagcaggggtggggc
gaggacagcgacctggaacgcatggaggaaggcggtcgcatggtcggcgcggtagcgagt
tatgtttcgcccaaagcccgcgagcggcagaaagacgaaatgggcaccctgggctccggc
aatcattatctggaagtgcagcgggtcgccgaggtttacgaccaacatgtcgccaatgta
tttgggttacgggtcgacgacgtcgtgatcagcatccattgtggttccaggggtctcggg
catcagatcggcaccgaatttttgcgcgacatggcgatagcggcaagtcaataccggatc
gatttaccggatcgagagttggcctgtgccccgctaacgtccccactgggcaagcaatat
ttgggagcgatgcgggcggcgatcaattgtgcgctggccaatcggcagatcatcacgcac
ttgacgcgcgatgcagtcaagacggtgtttcccggcgtgcatttgggtttgctatatgac
gtctcgcataacacgtgcaagcttgagcaacatgcgatcaacggtcagaaaaaggcgctg
ttcgtgcatagaaagggggcgacacgcgcgttcgggccggggcatcccgatctgccggcg
gtgttccgccaggttggccaaccgatgttgatcggcggttcaatgggaacgagttcctat
gtgctgtgcggcacgcaggaaagtgaaaaacgcgccttcaattcggcctgtcatggcgcg
ggtagagcgatgagccgccaccaagccaccaagcaatggcagggtagcgctctggtcgat
gacctggcggatcgcggcatcatcatccgtagcccgtcgctgcggggcgtggccgaagag
gccccgggagcctacaaggacgttagtgtagtggtggacgtggcagaccgtgccggattg
gctcgaaaggtcgcccaactggagcccttgatttgcatcaagggctga
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