Methylomonas rapida: NM686_018445
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Entry
NM686_018445 CDS
T08781
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mrp
Methylomonas rapida
Pathway
mrp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mrp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NM686_018445 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrp03021
]
NM686_018445 (rpoC)
03400 DNA repair and recombination proteins [BR:
mrp03400
]
NM686_018445 (rpoC)
Enzymes [BR:
mrp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NM686_018445 (rpoC)
Transcription machinery [BR:
mrp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NM686_018445 (rpoC)
DNA repair and recombination proteins [BR:
mrp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NM686_018445 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
Apocytochr_F_C
ApbA_C
gerPA
Motif
Other DBs
NCBI-ProteinID:
WAR44320
LinkDB
All DBs
Position
complement(3904461..3908660)
Genome browser
AA seq
1399 aa
AA seq
DB search
MNFLKRQGRTDDFDTIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAKIFGP
ISDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSLPSRI
ALLLDMTLRSIERVLYFETFVVTDPGMSPLEKGQLLTDEEYLNAVEEHGDDFVAKMGAEA
IYDLLKSIDLKEEINILREEINSTSSDTKIKKFSKRLKVIDSLLASNNRPEWMIMHVLPV
LPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLTRLLDLNAPDIIVRNEKRMLQEAVD
ALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLRLH
QCGLPKKMALELFKPFIFSKLQLRGLATTIKAAKKMVEREGAEVWDILEEVIREHPVLLN
RAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHIPLSIEAQLEARTLM
MATNNILSPANGEPVINPSQDVVLGLYYISREKVNAKGEGSIFTDLAEVMKALDAKAVEL
QSKIELRVTEKLKNADGEFETIVSRKKTTVGRAIIWGIVPDGMPYELVNVDMTKKNISRL
INYSYRYLGIKETVILADQIMYLGFRYATRSGVSFGIEDMEIPAKKADIIRAAEAEVNEI
QNQYSSGLVTDGERYNKVVDIWSRANDQVAKVMMEGLGEDEVVDASGQTVKQKSFNSIFM
MAESGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFISTHGARKGLA
DTALKTANSGYLTRRLVDVAQDLVIAESDCGTENGLTMMPIIEGGDVVEPLVERVLGRVA
AIDVTNPASNDVLIPAGTMIDENLVSVLEDHGIDKMIVRSVITCESRQGVCAKCYGRDLG
RGHLVNIGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRSAAVSNVQVKSAGSAKLNNLK
TVKNRENNLVAVSRSGEVGVMDEYGRERERYKIPYGAVLSIEDGSPVKAGDIIVNWDPHT
HPVITEVDGFIQLHDFIDGVTVQEQSDEVTGLTSRVVTDPKQRSAAGKELRPMVRLIDEH
GGLINLPGTDIPAQYFLPAGAIVSVKDGGEVKVGDVLARIPQESSKTRDITGGLPRVADL
FEARKTKDPAILAEATGMVSFGKETKGKQRVIITDAEGEHYETLIPKWRHITVFEGEFVE
KGETIAEGELTPHDILRLRGVEELADYLVKEIQDVYRLQGVKINDKHIEAIIRQMLRKVE
ITASGETDFVKGEQVERTLLNAVNEQAEKEGKIPASYESLLLGITKASLATESFISAASF
QETTRVLTDAAVRGISDSLNGLKENVIVGRLIPAGTGLAYHEQRRKRRAMESAPEVDSAI
SAAEAVDVEEALKQALNIE
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcctaaagcgtcaaggtcgtaccgatgattttgacactatccgtatcggcttg
gcatcacctgacatgattcgttcatggtcctatggtgaagtcaagaaaccggagaccatc
aattaccgtacttttaagccggaaagagacggcctgttctgcgccaaaatttttggccct
atcagtgattacgaatgcttatgcggtaagtacaagcgtttgaaacaccgtggcgtcatc
tgcgaaaagtgcggcgtggaagtcactttatccaaagtccgccgcgaacgcatgggccat
atcgaattggccagcccggttgcacatatttggttcctgaaatcactgccttccagaatt
gcattgttattggatatgacattgcgttcgatcgaacgcgtgttgtacttcgaaacattc
gtcgttaccgatccgggtatgtcgccgctggaaaaaggccaattgttgaccgacgaagaa
tacctgaatgcggttgaagagcatggcgatgatttcgtcgccaaaatgggcgctgaagcg
atctatgatttgttgaaatcgattgatctaaaggaagaaatcaatattcttcgcgaagag
atcaattcgaccagttcggataccaaaatcaagaagttttcgaagcgcttgaaggtcatc
gattccttgttggcttccaataaccgtccggaatggatgatcatgcacgtattgccggtg
ttgccgccggaattgcgcccattggtgcctctggatggtggccgctttgcgacatcggat
ttgaatgatctttatcgccgcgtcatcaaccgtaacaatcgtcttacacgcttgttggac
ttgaatgcgccagacattatcgtgcgtaacgaaaaacgcatgctgcaagaagcggtcgat
gccttgttggataacggtcgccgcggtcgtgcaatcacgggcagcaacagaaggcctttg
aaatccctggccgatatgatcaagggtaaacaaggccgtttccggcaaaatttgctgggc
aaacgggtcgattattcggggcgttccgttatcgtggtaggtcctaccttgcgcctgcac
caatgcgggttgccgaaaaaaatggcactggaactgttcaagccgttcatatttagcaag
ttgcaactgcgtggtttagccaccaccatcaaggcggccaagaaaatggtcgagcgcgaa
ggagccgaggtttgggatattctggaagaagtcattcgcgaacatccggtattgctgaac
cgggcgccgacgctgcaccgtttgggtattcaagcgtttgaaccaatcttgatcgaaggt
aaagcgattcaattgcatccgttggtttgtagcgcgttcaacgccgacttcgacggtgac
cagatggcggtgcatattccgttgtcgatcgaggcacaattggaagcacgtaccttgatg
atggcgaccaacaatattttgtcgcctgccaatggtgagccagtcatcaacccgtcgcag
gacgtggtcttggggttgtattacatcagtcgtgaaaaggtcaacgccaaaggtgagggg
agtatatttaccgatctcgccgaagtgatgaaggccttggatgcaaaggctgtcgagctg
caaagcaaaatcgagctcagagtcactgaaaaattgaaaaatgccgatggcgaattcgaa
accatcgttagcaggaagaaaacaaccgtaggtcgagcgattatctggggcatcgtgccc
gacggcatgccttacgagttggtcaatgtggatatgaccaagaaaaatatttctcggttg
atcaactatagctatcgttatttgggcatcaaggaaacggtaattctggcggaccaaatc
atgtatttgggattccgctacgccacgcgttccggagtttcattcggtatcgaggacatg
gaaatcccggccaagaaagcggacatcattcgcgccgcagaagcagaggtcaacgaaatc
cagaaccaatattcgtcaggtctggtcaccgatggcgaacgctataacaaggtcgtcgac
atttggtctcgtgcgaacgatcaggttgcgaaagtgatgatggaaggcctgggtgaggat
gaagtcgttgacgccagcggacagacggtcaagcagaagtcgttcaattccatttttatg
atggccgaatcgggcgcgaggggatccgcggctcagatccggcagttggcgggtatgcgc
ggtttgatggccaagccggacggctccatcatcgaaacgccgattacagcgaatttccgt
gaaggtttggacgtgttgcaatacttcatttcaactcacggtgcgcgtaaaggtctggcg
gataccgcgctgaaaaccgcgaactcgggttacttgactcgacgtttggtcgacgtggcc
caggatttggtgattgccgaatccgattgcggtaccgagaacggtctgaccatgatgcct
atcattgaaggcggcgatgtggtcgagccattggtcgaacgagtattgggccgggtcgct
gcgatagatgtcactaatcctgcgagcaatgatgtgttgattccagcgggtaccatgatt
gacgagaatctggtaagcgtgctggaggatcacggtatcgataaaatgatcgtgcgttcc
gtcattacttgcgaatccagacagggtgtgtgtgctaagtgttatggtcgcgatttgggt
cgagggcatctggtcaatatcggcgaggctgttggtgttgtcgccgctcagtctatcggt
gagcctggcacacagttgaccatgcgtacgttccacattggtggtgcggcatcgagatcg
gctgctgtcagcaatgttcaggtcaagtccgccggtagtgcgaagctgaacaacttgaag
acggtcaaaaaccgcgagaacaatctggtggcggtttccagatcgggcgaggttggcgtg
atggatgaatacggtcgcgaacgcgagcgttataaaattccttatggcgcagtgttgtcc
atagaagacggtagtccggtcaaagctggcgatattatcgtcaattgggacccgcatacc
catccagttattactgaggtagatggttttatccaattgcacgattttatcgatggggtg
accgttcaggaacagtcggatgaggtaacaggcttgacttcacgcgtggttaccgatccc
aagcaacgtagcgctgcgggtaaggaattacggcctatggttcgattgatcgatgagcac
ggtggcttgatcaatctgccaggcaccgatataccggcacagtatttcttgcctgcgggt
gcaatcgtcagtgttaaagatggcggcgaagtgaaggtcggcgacgtgctggcccggatt
ccacaagaatccagtaaaacccgggacatcaccggtggtttgccgcgtgttgccgacttg
ttcgaggcgcgcaaaactaaagatcctgcgattttggcggaggcaaccggtatggtttcg
tttggtaaggaaaccaagggtaagcagcgcgtcatcattaccgacgctgagggtgagcat
tacgagaccctgataccgaaatggcgacatatcacggtatttgaaggtgaattcgtcgaa
aaaggcgagacgatcgccgaaggtgaattgacgccgcatgacatcttgcgtttgcgcggt
gtggaagagttggctgattacctggtcaaggagattcaggatgtttaccggttacaaggg
gtgaaaatcaacgataagcacatcgaggcgatcattcgtcagatgttgcgtaaagtggaa
atcaccgcttcaggtgaaacggatttcgtcaaaggcgaacaggttgagcgtacattactc
aatgcggtcaatgagcaagccgagaaagaaggcaagattcctgcaagttacgaatcgctg
ttattgggtattaccaaggcgtcactggcgaccgagtccttcatatccgcggcatccttc
caggagaccactcgcgtgctgactgatgccgccgttaggggtatcagcgacagtctgaat
ggtctgaaggaaaacgtcattgtcggtaggttgattccagccggtaccggcttggcgtat
catgagcagcgccgtaagagaagggcaatggagtcggcgccggaagtcgattccgcaatc
agcgccgccgaagcagtggatgttgaagaggccctgaaacaggcactcaacattgaataa
DBGET
integrated database retrieval system
