Methylomonas rapida: NM686_019390
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Entry
NM686_019390 CDS
T08781
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
mrp
Methylomonas rapida
Pathway
mrp02020
Two-component system
mrp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mrp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NM686_019390
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NM686_019390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrp03021
]
NM686_019390
Transcription machinery [BR:
mrp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NM686_019390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
YabA
Motif
Other DBs
NCBI-ProteinID:
WAR44490
LinkDB
All DBs
Position
complement(4101211..4102650)
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AA seq
479 aa
AA seq
DB search
MKQSLQLRIGQSLTMTPQLQQAIKLLQMSTLDLQQEIQQALESNMMLEAEEEDLPTLEYR
EKKTENTDQVTSEGSQTDLPDELPVDVSWDDVYESMLPVGGDDAADSAEFETFRGKAQTL
QDHLIWQLELTHVSERDYAIAVAIIDAINDDGYVAMDLNEIHQGLLEQLDDVEMDEVRAV
LHMVQNFDPVGVAALDLADCLRLQLQQLPDDTPYKADALEFVCRHLELLATCDQNRLMKR
VGFSEAQLKGVLALIRTLDPKPGARLQEADVEYVVPDVFVTKVKDQWQVTLNPDIAPKLR
INPFYSGMIKRADNSQDNVSMKNHLQEARWFIKSLHSRNDTLLRVAKSIVEKQGDFFEHG
PIAMKAMVLRDIAEELSLHESTISRVTTQKYMHTPQGVIEFKYFFSSHVGTDGGGECSAT
AIRALIKELVGNENPAKPLSDSKISDLLNEKGIQVARRTIAKYREAMSIPSTSQRKRLI
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaatctttacaactcagaatcgggcaaagcctgacaatgacgccgcagttgcag
caggcgatcaagttgttgcaaatgtcgactttggatttgcagcaggagatccagcaggcg
ctcgagtccaacatgatgctggaagcggaagaagaggatttgccgactctggaatatcgg
gaaaagaaaaccgaaaacaccgatcaagtcactagcgaaggctcgcaaaccgatttgccg
gatgagttgccggtcgatgtcagctgggacgatgtctatgaaagcatgctgccggttggt
ggcgatgatgcggcggacagcgccgagttcgagacttttcgcggcaaggcgcaaaccttg
caggaccatttgatttggcaactggaactaacccacgtttcggagcgtgactacgcgatt
gcggtggccatcatcgatgcgatcaatgacgatggctatgttgccatggacctgaacgag
attcatcagggtttattggagcaactggacgacgtggaaatggatgaggtgcgggcagtg
ttgcacatggttcagaatttcgatccggtgggggttgccgctctggacttggccgattgc
ctgcgtttgcagctgcagcaattaccggacgatacgccgtataaggcagacgccttggag
tttgtgtgcaggcatctggaattattggcgacttgcgatcaaaatcgtttgatgaagcgg
gtcggctttagcgaggcgcagttgaaaggcgtgctggcgctgatcagaacgctagatccc
aagcccggcgcgcgcttgcaggaagccgacgtcgagtatgtcgtgcccgacgtcttcgtc
accaaggtcaaggaccaatggcaagtgaccttgaatccggatatcgcgcccaagctgcgt
atcaacccgttctattccggcatgatcaaacgtgccgataatagccaggacaatgtcagc
atgaaaaaccatctgcaggaagcgcgctggttcatcaagagtttgcacagtcgcaacgac
accttgctgcgggtcgcgaaaagtatcgtcgaaaaacagggcgattttttcgaacatggc
ccgatcgcgatgaaggccatggtgctgagggacattgccgaagaattgagtttgcacgaa
tccacgatttcccgcgtcaccacgcaaaaatacatgcatacgccgcaaggcgtgatcgaa
tttaaatatttcttctccagtcatgtcggcacggacggggggggcgagtgctcggctacg
gcgataagggcactgataaaagagttggtcggcaacgaaaatccggccaaaccattaagc
gatagtaaaatatccgacttattgaatgagaagggcatccaagtggcgcgtcgcaccatt
gccaaatatcgcgaagccatgtcgattccttcgaccagccagcggaaaaggctaatttaa
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