Moniliophthora roreri: Moror_10465
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Entry
Moror_10465 CDS
T03137
Name
(GenBank) atp dependent rna helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mrr
Moniliophthora roreri
Pathway
mrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Moror_10465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrr03019
]
Moror_10465
03041 Spliceosome [BR:
mrr03041
]
Moror_10465
03009 Ribosome biogenesis [BR:
mrr03009
]
Moror_10465
03016 Transfer RNA biogenesis [BR:
mrr03016
]
Moror_10465
Enzymes [BR:
mrr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Moror_10465
Messenger RNA biogenesis [BR:
mrr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
Moror_10465
Spliceosome [BR:
mrr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
Moror_10465
Complex C
U4/U6.U5 tri-SnRNP related factors
Moror_10465
Ribosome biogenesis [BR:
mrr03009
]
Eukaryotic type
Pre-60S particles
Helicases
Moror_10465
Transfer RNA biogenesis [BR:
mrr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
Moror_10465
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ESK91909
UniProt:
V2YJN9
LinkDB
All DBs
AA seq
1076 aa
AA seq
DB search
MDSNDLFSFLDGAPPENDDDVDMQETTVPAPASPKESAKKRKAEQSPTELNGDTKDGQED
TEKPHSPKRHKKEATPPPNPVVTDDFETEAKREVAASAGLQGNVEAGSRLELRHQVRHQV
AVPPGYNYIPISQHVPPPKPDREYKFELDPFQKVSVYAIQRNESVLVSAHTSAGKTVVAE
YAIAQCLARKQRVIYTSPIKALSNQKYREMLAEFGDVGLMTGDVTINPSATCLVMTTEIL
RSMLYRGSEIMREVAWVIFDEIHYMRDKERGVVWEETIILLPHTVRYVFLSATIPNAMQF
AEWICKSHDQSCHVVYTDFRPTPLQHYLFPRGGEGIYLVVNEKGEFREDNFSKAMGEIQD
RAGEDPADPRSGKGKKGKTKKGGEKKGPSDISRIIKMIMVKNFNPVIVFSFSKRECEGNA
LTMSKFEFNPTDEQDLVANIFNNAIENLSPEDRQLPQITNLLPLLKRGIGIHHSGLLPIL
KEVIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTDTRKFDGREQRNLSSGEYIQMSGR
AGRRGLDDRGVVIMMCDEKLEPTSAKEMIKGEADRLDSAFHIGYNMVMNLMKVEGISPEY
MLERCFHQFQSSAGIPRLEEELKVEENNKNSISIPDEEQVAEYYEYRQQLDQMAADFREV
ITHPTYSLPFLQPGRLVKIKHENLDFGWGVVLNYQKRLPPKNRPVPKAESEIPAHEQYIV
DVLLNVAPGGSVSAKDRTNMAPTPGNIQPCPINKKGVPLVVPVLLSTLDGISHIRIFMPK
DLRQDQARETVWKSVLEVHRRFPDGITLLDPVKNMGIKDDKFKALVQKIEAMEDKMFKSP
LHKDPRLPELYSLYAKKKESQERIRNLKKRIQATQDVLQLEELKCRKRVLRRLGFTNSND
IVDVKGRVACEISSGDELLLTELIFNGVFNSLEPEHCAALLSCFVFDEKSEQPTKLKEEL
AAPLRVMQDIARRIAKVSKESKLPIDEDQYVASFKVELMDAVMQWCRGASFSNICKLTDQ
FEGSLIRVFRRLGELLRQMAMAAKVIGNTELQQKFEKSSEMLERPNSVIFCSSLYL
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atggactctaacgatcttttctcattcctcgacggtgcaccaccggaaaatgacgacgat
gttgacatgcaagaaacgactgtacctgctccagcatcccccaaagagtctgcgaaaaaa
cgaaaagccgagcagagtccgactgaactcaatggagacaccaaggatggccaggaagat
actgagaaaccacatagtccgaaacggcataagaaggaagctacacctcctccaaatcct
gttgttacagatgattttgagacagaggcgaaacgcgaggtcgcagcgagtgctggattg
caaggaaatgttgaggcaggttcaagattagaacttcgacatcaggttcgacatcaagtt
gcagttcctccagggtacaactacattccgatatcacaacatgtacctcctccgaaacca
gacagagaatacaaatttgaattggatccttttcaaaaagtctctgtatatgcaattcag
cgcaatgagagtgtactggtctctgctcatactagtgccggaaaaactgttgttgcagag
tacgcgattgcgcagtgcttagcaagaaagcagagggttatttatacaagtccaatcaag
gcgttgagtaaccaaaaataccgagaaatgctcgccgaattcggagacgtcgggcttatg
acgggtgatgttaccataaatccgtctgcaacatgcctagtgatgacgactgagattctt
cgctcaatgctgtaccgaggctcggaaataatgcgtgaagtcgcttgggttatattcgat
gaaatccattacatgcgggacaaggaacgtggtgtcgtctgggaggaaaccatcattcta
ctgccccatactgttcgctatgttttcctttccgccacaatacccaacgccatgcagttt
gccgagtggatatgcaaatcgcacgatcagtcttgccacgtcgtctatacggatttccga
cccacgccactacaacactatctctttccaagaggcggagagggcatctatctggtggtc
aatgaaaaaggcgagtttcgagaagataatttcagcaaggccatgggcgaaatacaggac
cgggccggtgaagatcccgcagatcctcgaagtggcaagggcaagaagggtaaaaccaaa
aaaggtggcgagaagaagggtccctccgacatctctcgtataatcaagatgattatggtc
aaaaacttcaatccagtcatagtcttctccttcagtaaacgtgaatgcgaaggcaacgca
ctaacaatgtcgaaatttgaattcaaccccaccgacgagcaagatctcgtcgcaaacatc
tttaacaacgctatcgaaaacctctcgcctgaagaccgccagctaccccaaatcaccaac
ctcctgccgcttctcaagcgaggtatcggcatccatcatagtggacttttgccaattctc
aaggaagtcatcgagattctgttccaagaaggattgatcaaagttctcttcgcgacagag
actttctcgattggtctaaacatgcctgcaaagactgtggtctttaccgatactcgtaaa
ttcgacggtcgggagcagcgcaatttgtcttctggagaatacatccaaatgtcgggacgt
gctggacgtcgtggactggatgaccggggagtcgtcatcatgatgtgcgatgagaagctg
gaacctacatcggcgaaggagatgatcaaaggggaggctgaccggttggattcagctttt
catattggctataacatggtcatgaacctaatgaaggttgaaggaataagtcccgaatac
atgctcgagcggtgcttccatcagttccagagcagtgcgggtatacccaggttggaagaa
gagctcaaagtggaagagaacaataagaactcaatatcaataccagacgaagagcaagtc
gctgagtactacgaatatcgacagcagctggaccagatggcagcagacttcagagaagtc
attacacatccgacgtattcactaccgttcctccaacctggtcgattggtcaaaatcaag
cacgaaaatctcgactttggctggggtgttgttctcaattaccaaaaacgattgcctcca
aagaatcgaccagtaccaaaagctgaatccgagatccctgcgcacgaacagtatatcgtc
gatgttcttcttaacgttgcaccaggtggaagtgtctccgccaaagaccgtacaaatatg
gcacctacacctggaaacattcaaccatgtcccataaacaaaaagggtgttccactcgtc
gttccggtgctactctctactctagacggcataagtcatataagaatattcatgcccaag
gatttgcgtcaggatcaggccagagagactgtttggaagagtgtgctggaggttcaccgg
agattcccagatggcattacgttgttggatcctgtgaagaatatgggtatcaaggacgat
aagtttaaagctttggttcagaaaattgaggctatggaagacaaaatgttcaagagcccg
ttacataaagacccccgattacccgaactatattctctctatgcaaagaagaaggagtct
caagagcggatacggaatctcaagaaacggatacaagccacgcaagatgtgctgcaactc
gaagagctcaagtgccgaaagcgtgtcctgcgtcggctaggtttcaccaactcgaacgat
atcgtcgacgtcaaaggacgggttgcttgcgagatcagttcaggagatgagctgctattg
acagaattgattttcaatggcgtcttcaatagtttggaaccagaacattgcgctgccctt
ctgagttgcttcgtttttgatgaaaagagcgaacaacctacaaaactgaaggaagagttg
gctgccccgctccgtgtgatgcaagatattgctagacggatagcgaaagtatcaaaagaa
tccaagctgcctattgatgaagaccaatatgtagcatcattcaaggttgagttgatggat
gctgtcatgcagtggtgtcgaggcgcgtcgttctccaacatttgcaagctcacggatcaa
ttcgagggaagccttattcgtgttttccgtcgattaggcgaactacttcgtcagatggct
atggcagcaaaggtcatcggaaacacagagctgcaacaaaagtttgaaaagagctcagag
atgctggaacgaccaaattcggtcatattctgctcgtcattgtatttatag
DBGET
integrated database retrieval system
