Allomuricauda ruestringensis: Murru_1315
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Entry
Murru_1315 CDS
T01598
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mrs
Allomuricauda ruestringensis
Pathway
mrs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Murru_1315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrs03019
]
Murru_1315
03016 Transfer RNA biogenesis [BR:
mrs03016
]
Murru_1315
Enzymes [BR:
mrs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Murru_1315
Messenger RNA biogenesis [BR:
mrs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Murru_1315
Transfer RNA biogenesis [BR:
mrs03016
]
Prokaryotic type
tRNA degradation factors
Murru_1315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
OB_HELZ2
AbiEi_4
Flavodoxin_3
Ig_SIBA-E_2nd
DUF1318
Motif
Other DBs
NCBI-ProteinID:
AEM70357
UniProt:
G2PPA5
LinkDB
All DBs
Position
1428779..1430962
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AA seq
727 aa
AA seq
DB search
MSKKKKRAGSQRKNEITKGIFTVLEKEPSKTFNYKQIASKLGITDTQDRNLLIKRLGQLK
ASGRIVEPEKGKYQKKPSLHTYFTGRVDLTTSGNAYIVVDELEDDIFVQNNNLNRAFHGD
TVEVFIKPKRKSKKMEGEVSKVLERKKTSYVGIVDKQARFAFVRPTDSRMYTDIFVPLEK
LKKANDGDKVLVSLGDWPDDADSPYGEVIEVLGKPGEHNTEIHAILAEYGLPNEFPYEVE
EFAKTLDTSIKESEIAKRRDMRDVLTFTIDPKDAKDFDDALSFQKLENGNYEIGIHIADV
SHYVQPDSILEEEAYDRATSVYLVDRVVPMLPEVLSNKACSLRPNEEKYTFSAVFEMDDN
AKLVKQWFGRTAINSNERFAYEEAQHIIETEQNKIPKEISIREKAYSVSDDVVEAVLTFD
RLAKIMRQARMDAGAISFDKIEVKFHLSENNEPVGVYFKEAKDANKLIEEFMLLANRKVA
EFIGKQKKTFVYRVHDKPDEDKLMALNGVISRFGHSINLKDPKSINQSLNKLLEDVKGKK
EQNLVDTLAIRSMSKAIYTTENIGHYGLGFEYYTHFTSPIRRYPDVMVHRLLQHYLDKEK
IPKAVSFEEKCKHSSDMELLAANAERDSIKYMQIKFMEDHKDQEFLGVISGVTEWGIYVE
IIENKCEGMIRIRDIKDDYYVFDERQYAIIGERTKRMYQLGDEVYVMVKSTDLIKRHLDF
SLIGKKK
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaaaaagaagagagctgggagtcagcgaaagaatgaaattacgaagggcatt
tttacagtacttgaaaaagagccgtccaaaaccttcaattacaagcaaatagcttcaaag
ttaggtattaccgatactcaagatagaaaccttttaatcaaacgtttggggcagctaaag
gccagcggacgaattgttgagcccgaaaagggcaagtatcaaaagaaaccatcactccat
acgtattttacaggtagagtagatcttactacaagtggcaacgcctatattgtggtggat
gagttggaggatgacatctttgttcagaacaataatttgaacagggctttccatggtgat
acggtcgaagtatttatcaaaccaaagcgtaagagcaagaaaatggagggcgaggtttcc
aaagtacttgaacgaaaaaaaacatcttatgtgggcattgtggacaagcaagcacggttt
gcatttgttcggcctacggattccagaatgtacaccgatatttttgtgcccttggaaaag
cttaaaaaagcgaatgatggggataaagtattggtaagccttggagattggccagacgat
gccgactccccgtatggtgaagtgattgaggtactgggaaaaccaggcgaacacaatacc
gaaatccatgccattttagcggaatatggtcttcccaatgagtttccgtatgaggttgaa
gagttcgccaaaaccttggatacatctatcaaagagtcagaaattgcgaagcgcagggat
atgcgcgatgtacttacctttaccatagatcccaaggatgccaaggattttgatgatgca
ctttcctttcaaaaattggagaatggcaactacgaaataggtattcatatagcggatgtt
tcgcattatgtacaacccgatagcattctggaagaagaagcttatgatcgggccacatcg
gtatatttggtggaccgtgtggttcccatgttgcccgaagtactttccaataaagcgtgt
tccctgcgcccaaatgaagaaaaatatacattttctgccgtttttgaaatggatgacaac
gccaagttggtaaaacagtggttcggcagaactgccattaattccaacgagcgatttgcc
tacgaagaggcacagcatattattgagaccgaacaaaacaaaattccgaaggaaatatcc
atccgggagaaagcgtattccgtttcggatgatgtggtcgaagccgtactcacttttgat
agattggccaaaattatgcgacaggcccgtatggatgccggggcgatctcttttgacaaa
attgaggtgaagttccacctgtccgaaaacaacgaacctgttggcgtttattttaaagaa
gccaaggacgccaataagttgattgaggagtttatgctcttggccaacagaaaagtggca
gagtttataggcaaacaaaagaaaacgtttgtgtaccgtgtgcacgataagcccgatgag
gataaattaatggccttgaacggcgttatttccagatttggacatagtattaatcttaag
gacccaaagtccatcaatcagtccctaaacaagttgttggaagatgtaaagggcaagaaa
gaacagaacctggtagatactttggctatccgaagtatgagcaaagcaatttataccacg
gagaatattggccactacggtcttggatttgaatattacacgcattttacctcaccgatc
aggagatatcccgatgtaatggtgcaccgtttgctgcagcattatctggataaggaaaaa
ataccgaaagccgtttctttcgaggaaaagtgcaaacattcatcggatatggagttgttg
gcagccaatgcagaacgggattccattaagtacatgcaaatcaagtttatggaagaccac
aaggaccaagagttcttgggcgtgatatctggagttaccgaatggggcatttatgtagag
attattgagaataaatgcgagggaatgatccgaattcgcgatattaaagatgattactat
gtgtttgatgaacggcaatatgccataataggagaacgaaccaaacgaatgtatcagttg
ggggatgaggtttatgtgatggtaaagagcaccgatttgatcaaacgccatttggacttt
tcgttgatcggtaaaaagaaataa
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