KEGG   Marinomonas sp. RS-M-Aa-14: ACJ3XJ_13490
Entry
ACJ3XJ_13490      CDS       T11562                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
mrsm  Marinomonas sp. RS-M-Aa-14
Pathway
mrsm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mrsm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACJ3XJ_13490 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mrsm03021]
    ACJ3XJ_13490 (rho)
   03019 Messenger RNA biogenesis [BR:mrsm03019]
    ACJ3XJ_13490 (rho)
Transcription machinery [BR:mrsm03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     ACJ3XJ_13490 (rho)
Messenger RNA biogenesis [BR:mrsm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     ACJ3XJ_13490 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB S1CSD-TOTE-2 AAA_22 AAA_25 NACHT Fungal_virus_P2_C Spore_III_AA AAA DUF5010
Other DBs
NCBI-ProteinID: XLW31001
LinkDB
Position
2886947..2888212
AA seq 421 aa
MNLTDLKQKSVHELLDIASEMGLENMARSRKQDVIFSILKRHAKGGEDIYGDGILEILQD
GFGFLRSPDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKDGERYFALLKVNEIN
FDKPESVRNKILFENLTPLFPDERLLMEAGNGSTEDVTSRIIDLVAPMGKGQRALVVSPP
KAGKTFMLQNIANAITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALERPKRF
FGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNSELHLDRKIAEKRTFPAINI
RRSGTRREDLLTSEDELQRMWILRKLLNPMEDVAATEFLIDRLKVTQTNDEFFESMKGKN
K
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaaccttaccgacttaaaacagaaatcagtacacgaacttttagacatcgcatcagag
atgggcctagaaaatatggctcgctcccgtaaacaagatgttattttctcgatcctaaag
cgtcatgcaaaaggcggggaagacatatacggcgacggtatcttagagattcttcaagat
ggctttggctttttacgttcacctgatagttcatacttagcaggtcctgacgatatctat
gtatcgccaagccaaattagacgctttaacctacgaactggggatactatctccgggaaa
atccgccctccaaaggatggtgaacgttactttgcgctactaaaagtcaacgaaatcaac
tttgataaacctgaaagcgttcgcaataaaatcctttttgaaaaccttactcctcttttc
ccagatgaacgcctattgatggaagccggcaatggctccaccgaagacgttacttcacgc
atcattgatcttgttgcgccaatgggtaaaggtcagcgtgctttggttgtatctccgcca
aaagcgggtaaaaccttcatgctgcagaatattgccaacgctattacccgtaataaccct
gaatgtcacctcatcgtattactgatcgatgaacgtcctgaagaagtaaccgagatgtct
cgtaccgttcgaggtgaagtggttgcttctacgtttgatgagccaccagcacgccatgtt
caagtggctgaaatggtaatcgaaaaagcaaaacgcctcgttgaacacaaacgcgatgtt
gttatcctactagactccattactcgtttagcacgtgcctacaacacagtcatcccttca
tcaggcaaagtattaactggtggtgttgacgcaaatgcattagagcgtccaaagcgtttc
tttggggcggcacgtaacatcgaagaaggcggtagtttgactattatcgcaacggcgctt
gttgatacaggctccaaaatggacgaagttatctttgaagaattcaaaggtactggtaac
tccgaattgcatctagaccgtaaaattgcagaaaaacgaacattccctgcaatcaatatt
cgtcgctcaggtactcgtcgtgaagacttgttaacctcagaagatgaactacaacgtatg
tggattcttcgtaaactattgaatcctatggaagatgtagcagcaactgagttcttgatt
gatcgcctcaaagtcactcaaacaaacgatgagttctttgagtcaatgaaaggcaaaaat
aaatag

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