Malassezia restricta: MRET_0027
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Entry
MRET_0027 CDS
T06113
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
mrt
Malassezia restricta
Pathway
mrt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mrt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MRET_0027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mrt03041
]
MRET_0027
Enzymes [BR:
mrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MRET_0027
Spliceosome [BR:
mrt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
MRET_0027
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Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
WHD_HA2
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
AAA_16
T2SSE
nSTAND_NTPase5
SRP54
ABC_tran
PhoH
ATPase
Motif
Other DBs
NCBI-GeneID:
38736793
NCBI-ProteinID:
XP_027482633
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Position
I:complement(56693..59248)
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AA seq
851 aa
AA seq
DB search
MSDDRPAAEYHALRDRSRQEYLTKRSRQQVELLRQEIKDEETLFRGVRMSKREQRELEHK
RELLRIAEEFEGLDDGTDTYALPEDYLTEQGRLDRKRKESALHDRRYDQGSRSQRKRPAS
EGDVFEHEQIARSKLLDQPKESAEADAYDFVFDETQAIQFLLEKQAESPFNTLSDKELAM
QQQLQEAQERADSIDATRRSLPVYGLRQELLDAINDNQILIVVGETGSGKTTQLPQFLHE
AGYTKGGQMVACTQPRRVAAMSVAARVADEMGVRLGQECGYSIRFEDCTSDKTVVKYMTD
GMLLREFLTNPDLGSYSAIMIDEAHERTLSTDILFGLLKDIARFRSDLKLIISSATLDAD
KFSEFFDDAPIFFVPGRRFPVDILYTSQPEANYLHAVITTVFQIHTTQPKGDILVFLTGQ
DEIDAATENIEQTSRALGDKVAELIVCPIYANLPNDMQAKIFEPTPPGARKVVLATNIAE
TSITIDGISFVIDPGFVKQNSYNPRTGMAALTVVPCSRASSNQRAGRAGRVGPGKCFRLY
TKWAFQNEMDENTLPEIQRTNLANVVLLLKSVGIHDLLNFDFLDPPPTDTLIRSLELLYA
LGALNDRGELTKLGRRMAEFPVDPMMSKAILASEEYHCTEEVLSIVAMLSESASLFFRPK
DKKLHADRAKQLFIRPQGDHFTLLNIWEQWVESGYSQIFCLDHFLQPKTMGRVRDVRDQL
VQLCARVELVPESLTNPADVTPIQKAITAGYFMNTARIQKGGETYRSIKQNTTVYVHPSS
CLYKHVPPPRFLCYYELIETSKNFLRQVMEIQPAWLMEVARHFFSRDDLHDDSKQKHMLR
GTGAAPLGAKS
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgaccggccagcggctgagtaccatgcgctgcgggaccgatcacgtcaagag
tacctcacaaaacgatcaagacagcaagttgagctcttgcgtcaggaaatcaaggatgaa
gagacgctttttcgtggcgtgcggatgtccaagcgtgagcagcgcgaactggagcacaag
cgcgagctgctgcgtattgccgaagagtttgaaggcttggatgatggcaccgatacatat
gccctacccgaagattatctgaccgagcaaggacgtcttgaccgcaaacgcaaagaatct
gctttacacgaccgacgatatgatcaaggctcgcgctcacagcgaaaaaggcccgcgtcg
gagggtgatgtattcgagcatgagcaaatagctcgatccaaactgctcgaccagcccaaa
gaatccgcagaagcggatgcatacgactttgtctttgatgagacgcaagccatccagttt
ttgctggaaaagcaagccgagagtccattcaacaccttgtcggacaaggagctggcgatg
cagcagcagctccaagaggcccaggagcgagctgactctatcgatgctacgcgtcgctcc
ctgcctgtctacgggctgcgccaagagttactagacgcgatcaacgacaaccaaatactt
attgtggtcggtgagacagggtctggcaagacaacacagctaccccagtttcttcatgag
gcaggatacacaaaagggggacagatggtagcatgcacgcagcctcgtcgcgtagcagcc
atgagtgtggctgctcgcgtcgcggatgaaatgggcgtgcgcctcgggcaagaatgcggc
tacagtatccgctttgaagactgcacatccgacaagaccgtcgtcaagtacatgaccgat
ggtatgcttcttcgagaattcctgaccaacccggatctgggatcgtactcggccatcatg
attgacgaggctcatgaacgcacgctcagcaccgacattttgtttggcttgctcaaggat
attgcccgctttcgctccgatctcaagctcattatttctagtgcgacgttggacgcggac
aagtttagcgagtttttcgacgacgccccgatctttttcgtgcctggccgccgattcccc
gtcgacattctgtacacatcgcaacctgaagccaactacttgcacgccgtcatcacgacc
gtgttccaaatccacacgactcagcccaaaggtgacattctcgtgtttctcacaggtcag
gacgagattgatgctgctacggagaatatcgaacagacatcgcgtgctttgggcgacaag
gtggcagagttgatcgtgtgtcccatttatgccaatcttcccaatgatatgcaagccaag
atttttgagccaacgcctccaggagcccgcaaagtggtactcgctaccaacattgccgag
acgagtattacgatcgacggtatttccttcgtgatcgatcccgggtttgtaaaacaaaat
tcgtacaacccgcgcacgggtatggcggcattaactgtggttccatgctcgcgagcgtcg
tcaaatcagcgtgcgggtcgtgcgggtcgtgtgggcccgggtaaatgtttccgcttgtat
accaaatgggctttccaaaatgaaatggacgaaaatactttgcctgagattcagcgtacc
aacctggcgaatgtggtcttgttactcaaatccgtcggcattcacgatttgctcaacttt
gacttcttagatccgccaccgacggatacgctgattcggtccctggagcttttgtatgct
ttgggtgccctcaacgaccgcggagagcttaccaagttgggtcgtcgtatggctgaattt
cctgtggatcccatgatgagcaaagccattttggcaagtgaagaataccattgcacagaa
gaagtgctctccatcgtggccatgctgtcagaaagcgcgagtctgttctttcggcctaaa
gataaaaagttacacgcggaccgtgcgaagcagctgtttattcgcccccaaggtgatcac
ttcacgctactgaatatatgggagcagtgggtggaaagtggctacagtcagatcttttgc
cttgatcactttctgcagcccaagaccatggggcgtgtccgcgatgtgcgtgatcagctg
gtgcaattatgtgcgcgtgtagagcttgtgcctgaatccctgacgaaccctgcggatgtc
acgcccatccaaaaagccataacggccggctactttatgaacacagctcgtattcaaaag
ggcggtgagacttaccgcagcatcaaacaaaacacaactgtgtacgttcatccttcctct
tgcttgtacaagcatgtgccaccaccgcgctttttgtgctattatgagttgatcgagaca
tccaaaaattttttgcgacaggtgatggaaattcagccggcatggctcatggaggtggcg
cgtcacttcttttcgcgcgacgatttgcatgacgattcgaagcaaaagcacatgcttcgc
ggaacaggagcagcgcctctgggcgccaagtcttga
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