Malassezia restricta: MRET_0181
Help
Entry
MRET_0181 CDS
T06113
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
mrt
Malassezia restricta
Pathway
mrt03008
Ribosome biogenesis in eukaryotes
mrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrt00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
MRET_0181
09123 Folding, sorting and degradation
03018 RNA degradation
MRET_0181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrt03021
]
MRET_0181
03019 Messenger RNA biogenesis [BR:
mrt03019
]
MRET_0181
03009 Ribosome biogenesis [BR:
mrt03009
]
MRET_0181
03016 Transfer RNA biogenesis [BR:
mrt03016
]
MRET_0181
Transcription machinery [BR:
mrt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
MRET_0181
Messenger RNA biogenesis [BR:
mrt03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
MRET_0181
Ribosome biogenesis [BR:
mrt03009
]
Eukaryotic type
Pre-60S particles
RNases
MRET_0181
Transfer RNA biogenesis [BR:
mrt03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
MRET_0181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
38736947
NCBI-ProteinID:
XP_027483177
LinkDB
All DBs
Position
I:complement(join(293256..296387,296417..296419))
Genome browser
AA seq
1044 aa
AA seq
DB search
MGVPALFRWLSKKYPKIVQSVEEEEPGHMPGPDGHMVDIPIDISRPNPNGEEYDCLYLDM
NGIVHPCTHPEGKPPPETEEDMMIEVFKYTDRVINMIRPRKFLMLAIDGVAPRAKMNQQR
SRRFRSAQDAKILHEQREQELEERKKKGLAGEEEAIQKSWDSNVITPGTPFMDLLASSLR
YWIAHKLNTDPGWKNLCVVLSDASVPGEGEHKIMDYIRRKRSDPNHDPNMRHVIYGLDAD
LIMLSLATHEPHFKVLREDVFAQDAKHRGCHRCGQKGHIAAHCRGEARKEDAKPLQKKPF
IFLDVPTLREYLNVELQTPGIPFAFDLERAIDDWVFLIFFVGNDFLPHLPSLEIREGAID
TLLKIWKRELPNMSGYVTNNGKVELANAQFILDGLAQAEDDIFRKRKEVEDRQEANKRRH
TSNYSEAQHGDTTYVGHAKVIPPRPVAPPTIGPSKSVPGSRNKGPIMLDGDNADVVKNRA
QIRMANISAAEQLKMELSQGQGIKRTSSPVEKESKRIKADPEESAPVKEEDVLGDDSIKA
EEDDDDEEVPPETKMLERKINADGTVEYQDTVKLWEPGYRERYYRQKFGVELSDTKFRRE
VVQAYVEGLCWVLAYYYQGCPSWKWYYPYHYAPFAADFTDMHTMQITFEKGEPFRPFEQL
MGVLPAASKNNLPKPFQWLMTDPESEILDFYPAEFLVDMNGKKMAWQGVALLPFIDEKRL
LDALHKRYDQLTDEEVRRNSFGRNVLFVSDDADLYPTLSQLYAKRSDKRAVHIDTARIPQ
MAGSLAADTTCVPGATYYSPLHSLPDMQDIPHDRSISAHYEFPEQRVPHRSVLLQGVRMP
SRRLTPADQDWIRRGGRGQGGGRGRGRRDGWNDQGVLYGRDARPPSQSPYGAGPYGGGPY
GGGPYGGGPYGAAYGSGPYGAGPYGGGAYGAGPYGAGPYGGGPHGGGPYGTGPYGGGPYG
GGPYGGGPYGGGPYGGGPYGGGPYGGGPYGGGPYGAGPYGASAYGSSPYGAGPYAGSAYG
SAYGQNQTGYGALPYRGYGAPRGR
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgccagcattgtttcgatggctgtcaaaaaagtacccaaagatcgtgcagagt
gttgaggaagaagagccagggcacatgcctggccctgacggccacatggttgacattccc
atcgacatatcgcggcccaatccgaatggggaggaatatgactgtttgtatctagatatg
aacggcatcgtgcatccatgtacgcatcctgaaggcaagcctccgccggaaacggaggag
gacatgatgatcgaagtgttcaagtacacggaccgcgtcatcaacatgatcaggccgcga
aagtttctgatgcttgcgatcgacggggtggcaccgcgtgcaaaaatgaatcagcagcgc
tcgcgtcgctttcggtccgcccaggacgctaaaatcttacacgaacagcgtgagcaagag
ttggaagaacgcaagaaaaaagggctcgcaggtgaagaagaggctatccaaaagtcatgg
gactcgaacgtcatcactccaggtacaccttttatggatctgttggcttcatcgctgcga
tactggattgctcacaagttgaataccgatcctggatggaagaacttgtgtgtcgtactt
tccgatgccagtgtgcccggagaaggcgagcacaagattatggactatattcgcagaaag
cgcagtgacccaaatcatgacccaaatatgcgccatgtcatctacggactcgatgccgac
ctgatcatgctctcacttgcaacgcatgaaccgcacttcaaggtgctccgtgaggatgta
tttgctcaggatgccaagcaccgcggatgccatcgatgcggccaaaaaggacacattgct
gcccactgccgtggcgaagcacgtaaagaggatgccaagcctctgcagaaaaaacctttt
atattcttggacgtgccgactctacgtgaatacttgaacgtggaattacagacgccgggc
attccatttgcctttgatttggagcgggccattgacgactgggtgttcttgatctttttc
gtgggcaacgactttttaccccatctacctagtcttgagatccgcgaaggtgcgattgat
acgctgctcaaaatctggaagcgtgaactgccaaacatgagtggatatgtgacgaacaat
ggcaaggtcgaattggccaatgcgcagttcattcttgatggcttggcacaggcagaagat
gatattttccgcaagcgcaaagaggtcgaagatcggcaggaggccaacaagcgccggcac
acgtctaactacagcgaagcgcaacatggcgacactacctacgttggacatgccaaagtg
ataccaccgcgacctgtggcaccaccaacgattggacccagtaaaagtgtgccaggctct
cggaacaagggtcccatcatgctagatggagacaatgccgacgtggtcaagaaccgtgct
cagattcgcatggcaaatattagtgccgctgagcagctgaaaatggaattgtcgcaaggt
caaggtataaaacgcacgtcttccccggtagagaaggagagtaaacgtatcaaggcagac
cctgaagaatccgcccctgtcaaggaagaggatgtcttaggagacgattctatcaaggcc
gaagaggatgatgacgacgaagaagtgccgcctgagaccaagatgctcgagcgcaaaatc
aatgcggacggcacggtcgagtaccaagacacagtcaagctgtgggagccagggtatcgt
gagcgctactaccggcaaaagtttggtgtcgagctgtcagataccaagtttcgccgtgag
gtcgtccaggcgtacgtggaaggactgtgctgggtcctcgcatactactatcagggctgt
ccgtcgtggaagtggtattatccataccattacgcgccttttgcggccgactttaccgac
atgcacacgatgcagattacctttgaaaaaggcgagcctttccgaccttttgaacagctc
atgggtgtgctacccgcagcaagcaagaacaacttgccaaagccgttccagtggctcatg
accgacccagagtcagagatccttgatttctacccggccgagtttttggtcgacatgaat
ggcaaaaaaatggcatggcagggcgtagctctcttgccatttatcgacgagaagcgattg
ttggatgcattgcataaacgatacgaccagttaacggatgaagaagtgcgtcgaaactcg
tttggacgtaatgtactttttgtgagcgatgatgccgacttataccccacactgagtcag
ctctatgccaagcgaagtgacaaacgcgctgtacatattgatacggcgcgcattccacag
atggctggcagccttgcagctgatacaacatgtgtaccaggtgctacatactactcgccc
ttgcactctttgccggatatgcaagatatcccacacgatcgcagtatctcggcgcactac
gagtttcctgaacaacgtgtacctcaccgaagcgtgctcttgcaaggtgtgcggatgccg
tctcgacgtcttacgccagctgaccaagactggattcggcgtggtggacgtggccagggc
ggcggacgaggccgtggtcgtagagatgggtggaatgaccaaggtgtattgtatggccgc
gatgcaagacctccgagccagagtccttatggcgcgggtccctatggaggagggccttat
ggaggcgggccctatggaggcggtccttatggggctgcttatggtagtggtccctatggt
gctggtccgtatggaggcggtgcttacggcgctggtccgtatggtgccggtccgtacgga
ggcggtcctcatggtggaggtccttacggcactggcccctatggaggcggaccctatgga
ggcggaccctatggaggcggaccctatggaggcgggccctatggaggcggtccttatgga
ggtggtccttatggaggtggtccttatggaggcggtccttatggcgccggcccttatggc
gctagtgcttatggaagcagcccctacggtgccggcccttatgctggatcagcgtacggt
tcagcgtatggccagaaccagactggctatggagcgctgccgtatcgcggatatggagct
ccgcgtggccgttaa
DBGET
integrated database retrieval system
