Malassezia restricta: MRET_0460
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Entry
MRET_0460 CDS
T06113
Name
(RefSeq) ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mrt
Malassezia restricta
Pathway
mrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MRET_0460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrt03019
]
MRET_0460
03041 Spliceosome [BR:
mrt03041
]
MRET_0460
03009 Ribosome biogenesis [BR:
mrt03009
]
MRET_0460
03016 Transfer RNA biogenesis [BR:
mrt03016
]
MRET_0460
Enzymes [BR:
mrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MRET_0460
Messenger RNA biogenesis [BR:
mrt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
MRET_0460
Spliceosome [BR:
mrt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
MRET_0460
Complex C
U4/U6.U5 tri-SnRNP related factors
MRET_0460
Ribosome biogenesis [BR:
mrt03009
]
Eukaryotic type
Pre-60S particles
Helicases
MRET_0460
Transfer RNA biogenesis [BR:
mrt03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
MRET_0460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
38737226
NCBI-ProteinID:
XP_027483108
LinkDB
All DBs
Position
I:join(783158..786237,786270..786285)
Genome browser
AA seq
1031 aa
AA seq
DB search
MGKRGTDRTPSTAVSPQEPDGAKKSRIDDAPAVVTDEFTAESVRQVPTAEDAQSTDHDSS
SIQQSAATLKLSHSVRHQVAIPPGYDYVPLSKHVPRDPPSRSWPFELDPFQRTSVHCIER
NESVLVSAHTSAGKTIVAEYAIAQALRDRQRVVYTSPIKALSNQKYREFAAEFGDVGLMT
GDVTLNPSASCLVMTTEILRSMLYRGSELMREVAWVVFDEIHYMRDKERGVVWEETIILL
PRKVHYVFLSATIPNAMQFAEWISQIHAQPCHVVYTDFRPTPLQHYLFPQGGNGIHLVVD
EKGVFREDNFQRAMGALAEARGDDPASTDSGKGRKGQSKKGGANSSGTSDIYKIVKMIML
KKYNPVIVFAFSKRQCEALALQMTKLEFNTDEEKDMVSTVFKNATACLNEEDQNLPQIQH
ILPLLRRGIGIHHGGLLPILKEVIELLFQEGLLKVLFATETFSIGLNMPARTVVFTAVRK
WDGNEFRNLSSGEFIQMSGRAGRRGLDDRGIVIMMFDEKLEPSAAKVMVKGEADRLNSAF
HLGYNMILNLMRVEGISPELMLQRCFFQFQQAASVPMLEDKLAAAKQNHDAITVPDEDEV
AAYYTMKKTLAQLDADRREVMRHPSYALPFLQAGRLIKVQHDDTDYGWGVVVSYQKRMPP
RGQEFDPRAPAHSLYVVDTLLHCASGTVVPKQREFAPSFSGIEPASSSSGEWISVPILLS
HVQEFSGIRVFLPKDVRLRDARAQVGKNLQEVHRRFPSGLPRLDAVKDMKIDDMSFKQLL
GKMEILQTRMEQAPIAQDQTSFQPKYDLYAKKRESADLVQTLESQISTAHNVLQLDELKC
RKRVLRRLGFTSSEDIVEKKGRVACEISTGDELLLTELIFTGTFNDMEPEHCAALLSCFV
FGERSEHPVRLKEELAAPLRILQDTARRIAKVSVECRLPVVEQDYVQSFKVELMDAVLQW
CQGARFVDICKMTDVFEGSIIRAFRRLQELLRQMSQAAKAIGDEELSSKFEQSLAKLERP
NSIIFSPSLYL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagcgaggcacggatcgcacgccctcgacagcggtgtcgccgcaagaaccggat
ggtgcaaaaaagtctcgtatagatgatgcaccagctgtcgtgacagacgagttcacagcc
gagtctgtgcgacaagtgccgacagccgaagacgcacagtctaccgaccatgactcgtcg
tccatccagcaatcggcggcgacgctgaagctgtcgcactcggtgcgccaccaggtggct
attccacctggctatgactacgtgcctttatccaagcatgttccgcgtgatccaccctct
cgctcgtggccttttgagctggatccgttccagcgaacgtcagtccactgcattgagcgt
aacgagagcgtccttgtatcagctcatacctccgcaggtaagacaattgtggcagaatat
gccattgcccaagctctacgtgatcgccagcgtgtcgtgtacacatcgcccatcaaggcc
ctgtccaaccaaaagtaccgtgaatttgcggctgagtttggtgacgtcggcttaatgacc
ggcgatgtcactctcaatcctagtgcttcttgtcttgtcatgacgactgaaattcttcgg
tccatgctgtatcgtggatctgagctcatgcgtgaagtcgcttgggtcgtgtttgatgaa
attcactacatgcgcgataaggagcgtggtgttgtatgggaagagaccatcattcttttg
cctagaaaagtgcattatgtcttcctatcagccaccattccaaatgctatgcagtttgcc
gagtggatctcccaaatccatgctcagccatgccatgttgtgtacacagattttcgcccc
acaccattgcaacattacctatttcctcagggcggcaacggcattcaccttgtggtggat
gaaaagggtgtgttccgtgaagacaatttccagcgagctatgggtgccctggcggaggct
cgcggcgatgatccggcgagtaccgactcaggcaagggtcgaaagggccagtcgaagaaa
ggaggtgccaactcttcgggtacatccgacatttacaagattgtcaaaatgatcatgctg
aaaaaatacaatcccgtcattgtatttgcatttagcaagcggcaatgcgaggctcttgcg
ctgcagatgaccaaactagaattcaatacggacgaggaaaaggatatggtctccactgtt
ttcaagaacgccacggcatgtctgaatgaagaggaccagaacctgccgcaaattcagcac
attcttcctcttctccggcgcggtatcggtatccatcacggaggactccttcccattctt
aaggaagtgatcgagttgctgtttcaggagggtcttcttaaagttctgtttgctacagag
acattcagtattggtctcaatatgccagcgcgcaccgtcgtattcacggctgtgcgcaaa
tgggatggtaatgaattcagaaacttgtcatcgggtgagtttattcagatgagtggtcgt
gctggtcgtcgcggtttggatgaccgtggtattgtcattatgatgtttgacgaaaagctt
gaacccagcgctgccaaggtcatggtcaagggcgaggctgatcgactgaacagcgctttt
catctcggctacaacatgattttgaatctgatgcgggtagaaggaatttcccccgagctt
atgttgcagcgctgctttttccagttccaacaggctgcgtccgttccaatgctcgaggac
aagcttgctgcggccaagcagaatcacgatgccatcactgtcccggatgaggatgaagtc
gctgcgtactataccatgaaaaagacgcttgcgcagcttgatgctgaccgtcgcgaagtg
atgcggcaccctagctatgctctaccatttctccaagcaggccgccttatcaaggtgcag
cacgatgacaccgattacggctggggcgttgtcgtgtcctatcaaaagcgcatgccgccg
cgtggccaggaatttgatcctcgtgcaccggcgcatagtctctacgtcgtggataccttg
cttcattgtgcaagtggcacggtcgtacccaagcagcgcgagtttgcgccttccttctcg
ggcattgagcctgcgtccagcagtagcggtgaatggatcagtgtgcctattttgctttcg
catgtccaagaattcagtgggattcgcgtgtttttgcccaaagacgtgcgcttgcgcgat
gctcgagctcaggtgggcaaaaacttgcaagaagtacatcgccgcttcccatccggtctg
ccgcgcctcgatgcagtcaaggacatgaagatcgatgatatgtccttcaagcagctgttg
ggtaagatggaaattttacagacgaggatggagcaggcccctattgcccaagaccaaacg
tcattccagcccaagtatgatttgtatgccaagaaacgcgagagtgccgatctggtgcag
acgctcgagtcacaaatttccacggctcacaatgtgctgcagctcgatgagctcaagtgc
cgcaaacgcgttcttcgccgactcggcttcacctcatccgaagacatcgtcgaaaagaaa
ggccgcgtggcatgtgaaatttccacaggcgatgaattgctcctcacggaactcattttt
accggcacgtttaacgacatggagccagagcattgcgcagcgcttctctcatgtttcgtt
ttcggtgagcgtagtgaacacccggtgcgattgaaagaagagcttgcagcgcctcttcgt
atacttcaagacaccgctcggcggatcgccaaagtgagcgtcgaatgccgccttcctgtg
gtggagcaagactatgtccagagcttcaaagtggagttgatggatgccgtcctacaatgg
tgtcagggcgcgcgctttgtcgacatctgcaagatgacagacgtgttcgaaggttctatt
attcgtgcgttccgtcggcttcaggaactactacgccaaatgtcgcaggcagccaaagct
atcggtgacgaggaactgtcgagtaaatttgagcaatcacttgccaagctagagcgtccc
aactcgatcatcttcagcccctcactctacctttga
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integrated database retrieval system
