Malassezia restricta: MRET_1877
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Entry
MRET_1877 CDS
T06113
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mrt
Malassezia restricta
Pathway
mrt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mrt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
MRET_1877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrt03021
]
MRET_1877
03019 Messenger RNA biogenesis [BR:
mrt03019
]
MRET_1877
Transcription machinery [BR:
mrt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
MRET_1877
Messenger RNA biogenesis [BR:
mrt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
MRET_1877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_C
CID
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
38738643
NCBI-ProteinID:
XP_027484555
LinkDB
All DBs
Position
III:join(444672..444992,445033..446370)
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AA seq
552 aa
AA seq
DB search
MYPRTYGYGQVRPEGYGYAGAFGPYSYGAYPQAPAMPQPNGVSAYGMPVLPPDLSNPAVF
ESMYKSHLAQLTFNSKPIITNLTLIAQEHVHRMSTVVAKLVDAHIMMAPPPLRLPALYLL
DSICKNIGSPYTELWAPRASTLFMESYRVVDQPTRRRMEELLATWREAGPGGRPMLGDAS
QQAIERSLYGSQGAPVKAANAPNKSQVIADIERRMALCTKDLANEPHNTRAREQNDVLRQ
LKEQVNGSDVSAELLGHIQKQLDEMSSASVPTVPAPAPTSAPAAPSASELIANLMKAGLL
PSSATTTAAPTSVPSTQSQDKAYTDYIMSLDLRMVTVNLSRPAPELEILMQEHLPHPCRQ
CANRYPEGEAGQHSLDDHLDWHFTQNRRARASIVRGQSRAWFDPASRWIRSGIDDVMPGA
SGAPGWEGEDAEFEQALRDKIANAYVPVPDGSELASHTCRICKEPFQSEWSEDLEEWIWR
NAVLIEGNHYHASCFYSAKSMSEVVHAARSTTNVKQGEEDDEDVQRKRKASSSPPLPPHK
KPLAMLKEEPPP
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgtatccacgcacatatggctatggccaagtacggccggagggttacgggtacgctggt
gcgtttggaccgtacagctatggggcatacccgcaagcacctgccatgcctcagcctaat
ggtgtgagcgcctatggtatgccagttctgccaccggatctctcgaaccctgccgtattc
gagtccatgtacaaaagtcaccttgctcagctcaccttcaactcgaagcccatcatcaca
aatcttactcttatcgcgcaggaacatgtgcaccgcatgtccacagtcgtggcgaagctt
gtggatgctcatattatgatggcgccaccgccacttcggctacctgcgctttacctgctt
gactcgatttgcaagaacatcgggtcgccctacacagagctgtgggcgccgcgagcgtcc
actcttttcatggagtcttatcgcgtcgttgatcaacccactcgccggcgcatggaggag
ctactagccacctggcgcgaagcaggacctggaggccgacctatgctgggtgacgcatct
caacaggccatcgagcgttccctgtatggcagtcaaggtgcccctgtcaaggcagccaat
gcacctaataaatctcaggtgattgctgacattgaaaggcgcatggcactgtgcacaaaa
gacttggcgaatgaaccgcacaatacccgcgcacgagaacaaaatgatgtattgcgtcag
ctcaaagagcaagttaatggctctgatgtgtccgctgaattgcttggccacatacagaag
caactggatgaaatgtcgagtgcttcggtgccaacggtgccagcgccggcccccacatca
gcgccagccgctccatcggcctctgagctcatcgcgaaccttatgaaggcaggattgctg
ccttcttcggctactaccactgcggccccgacatctgtgccatccactcagagccaagac
aaggcctataccgattacatcatgtcactggatttgcgcatggttaccgtcaacctatct
cggcccgcacctgaacttgaaattctcatgcaggagcacttgccacacccatgtcggcaa
tgtgccaatagataccctgagggtgaggctggacaacacagtctcgatgatcatttggac
tggcatttcacgcaaaaccgtcgtgcgcgtgcaagtatagtccgtggtcaaagtcgtgca
tggttcgatccagcatcgcgttggattcggagtggcattgatgatgtaatgcctggggcg
agtggtgcacctggatgggaaggtgaggacgccgaattcgagcaagcactgcgcgacaag
attgctaatgcgtatgtgcccgtgcctgatggctctgaacttgcatcacatacttgccgt
atctgcaaagagccgttccaaagtgagtggagcgaagatttggaggaatggatatggcga
aacgctgtcctcatcgaaggcaatcattaccatgctagttgcttctattcagccaaaagt
atgtcagaagtcgtccatgctgctcgctccacgacgaatgtcaaacaaggagaagaagac
gatgaagatgtgcagcgaaaacgtaaagcctcgtcctctccccccctgcctccgcacaag
aaacctttggctatgctcaaggaagaaccgcccccctaa
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