Malassezia restricta: MRET_1912
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Entry
MRET_1912 CDS
T06113
Name
(RefSeq) essential RNA-binding component of cleavage and polyadenylation factor
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
mrt
Malassezia restricta
Pathway
mrt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mrt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
MRET_1912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrt03021
]
MRET_1912
03019 Messenger RNA biogenesis [BR:
mrt03019
]
MRET_1912
Transcription machinery [BR:
mrt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
MRET_1912
Messenger RNA biogenesis [BR:
mrt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
MRET_1912
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCHC
zf-CCCH_RBM22
zf-CCCH_12
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
38738678
NCBI-ProteinID:
XP_027484772
LinkDB
All DBs
Position
III:518850..519779
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AA seq
309 aa
AA seq
DB search
MTNVLALPVEYVPSHATTSLFSSFRQRRPPSDDDWAHNEFDFEPFVKNDLQIKLETDDQT
CPRFQRGRGTCHLGGACTLRHCLTPSPPIPTNQTRDVSRRTVCKHWLRGLCKKGDMCDYL
HEYDLRRMPECRFFATFGFCNSTEDCLYVHIEPSVKRRRCERYERGFCELGPQCPKKHVR
RTACPYYLAGFCPLGTECNMGHIKPFVPSPESRATTPLLTHRPLTMMEAFGGAPGIQELP
TDRHTGRAMIPAKDWAAAAELRKSTASQDMNARKLNDVLCYKCGEYNHFANACPNSARLG
LRDRGWRPM
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacgtcttggcgttgcctgttgagtatgtgccgagccacgctacgacatcgctg
ttttctagtttccggcagcgcagaccacccagtgatgacgattgggcgcataatgagttt
gattttgagccgttcgtgaagaacgacttgcaaatcaagctcgagacggatgaccagaca
tgcccgcgtttccagcgtggacgtggtacgtgccacttgggcggtgcgtgcacgctgcgc
cactgcctgacgccatcgcccccgataccaacgaaccagacccgtgatgtgtcacggcgc
acggtctgcaagcactggctgcgaggactgtgcaagaagggcgacatgtgcgactacctg
cacgagtacgacctgcggcgcatgccggagtgccgctttttcgccacttttggattctgc
aactcgacggaagactgcttgtacgtgcacattgagcctagtgtcaagcgccgccggtgc
gaacgctatgagcgtggcttttgtgaattgggtccccagtgtcccaagaagcatgtgcgc
cgcaccgcctgcccgtactacctagctggcttctgcccgctgggcacggagtgcaatatg
ggtcatattaaaccgtttgtgccgtcgccagagtcgcgcgcgacgacgccgctcttgacg
caccgtccactgaccatgatggaggcgtttggcggagcgcccggcattcaagagctcccc
accgaccgtcatacaggcagagctatgattcccgccaaggactgggcagcagcagccgaa
ctgcggaagagcacggcctcacaagacatgaacgcacgcaagctcaacgatgtcctgtgc
tacaagtgcggcgaatacaatcactttgccaatgcgtgccccaactcggcgcgtcttggc
ctgcgcgaccgaggctggcggcctatgtag
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