Malassezia restricta: MRET_2460
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Entry
MRET_2460 CDS
T06113
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
mrt
Malassezia restricta
Pathway
mrt03018
RNA degradation
mrt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mrt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MRET_2460
09123 Folding, sorting and degradation
03018 RNA degradation
MRET_2460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrt03019
]
MRET_2460
03041 Spliceosome [BR:
mrt03041
]
MRET_2460
Messenger RNA biogenesis [BR:
mrt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MRET_2460
mRNA degradation factors
5'-3' decay
Lsm complex
MRET_2460
Spliceosome [BR:
mrt03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
MRET_2460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
COG2_C
Motif
Other DBs
NCBI-GeneID:
38739226
NCBI-ProteinID:
XP_027484886
LinkDB
All DBs
Position
IV:join(160743..160781,160807..160857,160882..161052)
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AA seq
86 aa
AA seq
DB search
MNITMRDVYETSANGEKFWKMPEVYIKGSTIKYCRVAHELIDTVREAEEQARKHRQQAAN
HSHGRGHRDGHHGRARGGQRGHRSRT
NT seq
261 nt
NT seq
+upstream
nt +downstream
nt
atgaacatcaccatgcgcgacgtgtacgaaacgagcgcgaatggcgaaaagttttggaaa
atgccagaagtgtacatcaaaggtagcacgattaaatactgtcgtgtcgctcacgaactc
atcgatacggtacgagaagcggaagaacaagcgcgcaagcatcggcaacaggccgccaac
cactcgcatggtcgtggtcaccgtgacggtcaccatggtcgtgcccgcggtggtcagcgc
ggccaccgctcgcgcacatag
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integrated database retrieval system
