Malassezia restricta: MRET_2647
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Entry
MRET_2647 CDS
T06113
Name
(RefSeq) antiviral helicase SKI2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mrt
Malassezia restricta
Pathway
mrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MRET_2647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrt03019
]
MRET_2647
Enzymes [BR:
mrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MRET_2647
Messenger RNA biogenesis [BR:
mrt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
MRET_2647
mRNA degradation factors
3'-5' decay
Ski complex
MRET_2647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4-like_stalk
MTR4_beta-barrel
ResIII
DEXQc_Suv3
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
38739413
NCBI-ProteinID:
XP_027485219
LinkDB
All DBs
Position
IV:complement(474814..478428)
Genome browser
AA seq
1204 aa
AA seq
DB search
MLLSDMWDSLAIVPGRDADKIRKEIGDELFKQKRHLDSPYVMLPQEQPERDDDFKEFLTL
ETGPSTFTVRFVKSGLRNRVIGIREVNKRPNDIDSSFMSLDVPITSKDVDFVRGSVAAKP
AVPSGLQEAALIASTDDDQFNDDEELRTVPPGFTRGYIADMPVDVTIKAPEWQAELEAQA
PTETEHTLITVEDDGLYVPYVSRPPKNDMEASYDKTLEGVTGFPRLFDDMPDVQKKEERR
EWAHIVEPSKSMHNFSELVPEMAYKYPFELDNFQKQAIYHLEQDDMVFVAAHTSAGKTVV
AEYAIALSMKHLTRCLYTSPIKALSNQKFREFKQSFGAQNVGIITGDVHINPEAPCLIMT
TEVLRTMLYRSATLLRDVEYVIFDEVHYVNDQERGVVWEEVIIMLPSHVNVVLLSATVPN
AKEFADWVGRTKQRDIYVISTSKRPVPLEHFLYAGNELYKIAGENRQFQTDNFHKAVEAL
KPKKEREAAATGKRGAARGGRGGRGGAVSHYQPKLTSNKSLWVNLVGMLRKRSLLPTVVF
VFSKMRCEEYADSLPNTDLCTAAEKSEVHVLIERSLLRLREEDRTVPQITRMRDMLHRGI
GVHHSGLLPIVKELVELLFQRGVVKVLFATETFAMGVNMPARSVVFSGIRKNDGTQFRTL
LPGEYTQMSGRAGRRGLDNTGVVVILCDKPELSTLNYMILGQPLKLKSQFRITYGMILNL
LRIETLRIEEMIKRSFSENATQRLLPDQQAKLNELVSQAEQLDATLKNMPLQREEVEEVY
AWTQRAVECSHAMMALVMHHPFGAKCLSPGRVVLLFTGSSTISPALIVRASEKQFLVLVA
LSPRHQYKRTRTGEPPYWITPHHIQSWDPETELVPEVCNVSPTDMALVTALEVDGVPTTA
IQSQQPAAVKKGLELLRPSIQHIRTYLAATGNDITRSIIDLEVDWSRLRRMDFKDAQRER
DEALDELVYVQPRAYTSTFMDQYRLLHKRHILERDISKLRASMSIENLELLPDYHQRFSV
LCELGCIQPDTCSITVKGHVASQIRSANELILADLIIREVLVEYEPVELAALLSVFHFRD
KTSVTPDLTHRVQEGLKEIGETADRIANVQLAHQLPADDDSSTLNDGLVQVVYEWANGMQ
FRDIMRLTDVGEGTIVRCITRLDETFRELADSARVSGDAVLLGKMETCRQLCRRDIVFAA
SLYF
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgcttcttagtgacatgtgggactctttggccatcgtgcctggtcgtgatgctgacaag
attcgcaaggagattggcgatgagttattcaaacaaaagcgtcacttagattccccctac
gtaatgcttccacaagagcagcctgagcgagacgatgacttcaaggaatttctcacatta
gaaacaggtccctcgacattcacggtacgcttcgtaaaatccggactgcgcaatcgagtt
attggtatacgtgaagtgaataagcgtccgaatgatattgactcgtccttcatgtctctt
gacgtgcccataacttccaaggatgtggattttgttcgcggctctgtggcggccaagcct
gctgtgccgagtggtcttcaggaggcagccctcatcgcatccacggatgatgaccaattc
aatgatgatgaagagcttcgtactgtgcctcctggcttcacacgtggatatattgctgac
atgcctgtcgacgtcaccataaaggcgccagagtggcaggccgaattagaagcgcaagct
cccaccgagacggagcacactttgatcacagtggaagatgatggtctctacgttccatat
gtatcgcgacccccgaaaaatgacatggaagcctcatatgataagacgctggaaggtgtg
accggctttccgcgcctctttgatgatatgcccgatgtgcaaaagaaggaggagcggcgt
gaatgggctcacatagtcgagccatcgaaatcgatgcacaacttctcagagcttgtgccc
gagatggcttacaagtacccattcgaactggataactttcagaagcaggccatctatcac
ttggagcaggatgacatggtgtttgtggcagcgcacacgtcggccggtaagacggtcgtg
gccgagtatgctattgccctttccatgaagcatctgacgcgttgtctttatacgtcgccc
atcaaggcgctgtccaaccagaaattccgcgaattcaagcagtcattcggtgcacaaaac
gtcggtatcatcacgggcgatgtccatatcaatcctgaggcaccatgcttgattatgacc
accgaggtgctgcggactatgttgtaccgctctgctacgcttcttcgcgatgttgaatac
gtgattttcgacgaagtacattacgtgaacgaccaagagcgaggtgtcgtttgggaagag
gtgattattatgctgccgtctcatgtgaacgtggtgctgctgtccgccactgtgccaaat
gccaaagagtttgctgattgggtgggacgcacgaagcagcgcgatatctatgtgatctcg
acgtccaagcgccccgtgcctctcgagcactttctgtacgcagggaacgaactgtacaaa
attgctggcgaaaatcgtcaatttcagacggacaatttccataaggctgtcgaggccctt
aagccgaaaaaggaacgtgaagcagctgccacgggaaagcgcggcgcagcccgaggcggt
cgcggtggccggggtggtgctgtgagccattatcaacctaagctgacgtctaacaaatcg
ctgtgggtgaatttggttggtatgctgcgcaaacggtccctgttaccgaccgtggtgttt
gtgttctcaaaaatgcgctgtgaagagtatgccgactcgttgcctaatacggacctgtgt
acagcggcggaaaagagcgaagtgcatgtacttattgagcggagtctcttacgacttcgc
gaagaagatcgaacggtgccacaaattacacggatgcgtgatatgctgcatcggggtatt
ggcgtacaccacagtggtcttctcccgatcgtaaaggaacttgtcgagttgctgttccag
cgcggtgtggtcaaggtactgtttgcgactgagacttttgccatgggcgtcaacatgcct
gcacgcagcgtggtattcagcggtattcgtaagaacgatggtacgcagttccgcacgtta
ctgccaggtgagtatacacaaatgtccggtcgcgctggtcgtcgtggtctggacaacacg
ggtgtcgtggtgattttgtgcgataagccagagctatcgacactcaactatatgattttg
ggccagcctcttaagctcaagtcccagttccgcattacttacggcatgatcctcaactta
cttcgcatcgagactctcaggattgaagaaatgatcaagcgctctttctctgagaatgcc
acacagcgactcttgcctgaccagcaagcgaaactgaatgagcttgtctctcaggctgag
cagctggatgcgacgctcaagaacatgccgctgcaacgcgaggaggtggaagaggtgtat
gcgtggacgcaaagggctgtggaatgcagtcatgccatgatggcgcttgtcatgcatcat
ccttttggcgccaagtgcctctcgcctggccgtgttgtgctcttgttcacaggctcaagc
acgatatcacccgcgctgattgtgcgtgccagtgagaagcaattcctcgtactggtcgcg
ctttctcctcgtcatcagtacaagcgaaccagaacgggcgagcctccctattggatcaca
cctcaccacatacagtcatgggaccccgagaccgagcttgtacccgaggtgtgcaatgta
tcgcccacggacatggcacttgtgacggcactagaggtggacggagtgcctaccactgcc
atccagtcgcagcaacctgctgctgtgaaaaagggactggagctgcttcggcccagcatt
caacacattcgcacgtacctcgcagcgacgggcaacgacatcacacgctctatcatcgac
ctcgaagttgactggtctcgattgcgccgcatggactttaaagatgctcagcgcgagcgt
gatgaggccctagatgagctagtatacgtccagcctcgggcctacacttcgacctttatg
gaccagtatcgcctactgcacaagcggcatatccttgagcgagacattagcaagctgcgc
gcatccatgtccatcgaaaacctagagctgctgcctgactatcaccaacgcttcagtgtg
ctttgtgagttgggctgtattcagccagatacctgcagcatcaccgtcaagggtcatgtc
gcaagtcagatccgcagtgctaacgagctcattttggccgacttgatcatacgtgaagtg
ctggtcgagtacgagcccgtagagctcgcagcgctcttgagcgtgttccacttccgcgat
aagacaagtgtgacacccgacctgacgcaccgtgtccaggaaggactgaaagaaattggc
gaaacggccgaccgtatcgccaatgtgcaacttgcccaccaactgccggccgatgatgac
tcctcgactctgaacgatggcctggtacaggtggtgtacgaatgggccaatggcatgcag
ttccgcgatatcatgcggctcactgacgtgggtgaaggcacgattgttcgctgtattacg
cgtctggacgaaaccttccgtgaattggctgactcggcgcgtgtatcaggcgatgctgtt
cttctcggcaagatggagacgtgtcgccagctatgccgccgtgatattgtgtttgctgct
agcttgtacttttag
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integrated database retrieval system
