Malassezia restricta: MRET_3138
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Entry
MRET_3138 CDS
T06113
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
mrt
Malassezia restricta
Pathway
mrt03018
RNA degradation
mrt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mrt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MRET_3138
09123 Folding, sorting and degradation
03018 RNA degradation
MRET_3138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrt03019
]
MRET_3138
03041 Spliceosome [BR:
mrt03041
]
MRET_3138
Messenger RNA biogenesis [BR:
mrt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MRET_3138
mRNA degradation factors
5'-3' decay
Lsm complex
MRET_3138
Spliceosome [BR:
mrt03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
MRET_3138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
38739904
NCBI-ProteinID:
XP_027485635
LinkDB
All DBs
Position
V:complement(join(539458..539482,539510..539693,539721..539877,539910..539942))
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AA seq
132 aa
AA seq
DB search
MSVPIATMSDRAQGHRSGRGGGRGGHGGRGGGHVHDKPKKEAILNLAKYVDKQIRVKFMG
NREVVGTLKGYDQLMNLVMDDVEELLHDPSSGSVTDERRTLGLAVLRGTNLMLISPVDGF
DIIENPFLQQDE
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgccaatagcaacgatgtcggatcgagctcaaggacatcgcagcggccgcgga
ggaggacgcggcggtcatggtggccgtggaggcggccatgttcacgataagccaaagaaa
gaagccattctgaacttggccaaatatgtggacaagcaaattcgcgtcaaattcatgggc
aaccgcgaagtcgttggcacacttaaaggctatgatcaactgatgaatcttgtcatggat
gacgtggaagagcttttacacgacccttcgtccggcagcgtcacagacgagcgtcgcaca
ttgggtctggctgtacttcgtggcaccaacttgatgctaattagtcccgtcgatggattt
gatattattgaaaacccctttctccagcaggatgaataa
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