KEGG   Malassezia restricta: MRET_3779
Entry
MRET_3779         CDS       T06113                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
mrt  Malassezia restricta
Pathway
mrt03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mrt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    MRET_3779
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mrt03041]
    MRET_3779
Spliceosome [BR:mrt03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    MRET_3779
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR90_POC16_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_EML WDR90_beta-prop_4th Beta-prop_WDR75_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st PRP4 NBCH_WD40 Beta-prop_HPS5 Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_RIG_2nd Nbas_N WDR54 Ge1_WD40 Beta-prop_EIPR1 Beta-prop_WDR75_2nd Beta-prop_DCAF12 RMC1_N
Other DBs
NCBI-GeneID: 38740545
NCBI-ProteinID: XP_027486452
LinkDB
Position
VII:16329..17768
AA seq 479 aa
MADQSVAWDELDTQGPPSASDAAAHAMLEHRKLAQKVPVPTSDTQVRERLRHYHEPITLF
GEREPDRRARLLHVLIDRHGKNAVHVSHAPQAPEEDEEEDEEFYTEGSHDLLIARRRMAA
FSLQRAKERLRQQCQESTASMQEVAALRQTVLEPLKSYTSLGTQVAAERPVSVVRFSPDA
SLLATGSWSGKASLWSIPNATPCGTMHAHEDRITGLAWHPRATIGQPRSAIHMATGAGDG
ALCTWSLESERPLSVLRGHEARVCRIAFHPMGDYLASASFDGTWRLWDVARAQELMLQEG
HSREVYAIDFQGDGALVASGGLDAIGRVWDTRTGRTAMVLDGHAREILGLAFAPNGYQLV
STSGDDTARVWDLRMLRSLYTIPAHHSSVADVRFFHAAESSLPSMDEDGSDTHSLSRSGL
YFATAGYDGLVKIWSADDWQLVKSLRGDAGKVMSVDISSDGQYVASGEWARTFKLWGHV
NT seq 1440 nt   +upstreamnt  +downstreamnt
atggccgatcagagtgtggcgtgggacgagctcgacacgcaggggcccccgagtgcgagc
gatgcggccgcgcatgccatgctagagcatcgaaagctcgcacaaaaggtgcctgtgccg
acctcggacacccaggtccgcgagcgcttgcggcactaccacgagcccatcacgctcttt
ggcgagcgcgagccggatcgccgggcgcgtctcttgcacgtcctcatagacaggcacgga
aaaaacgccgtgcatgtttcgcacgcgccccaggcacctgaggaagacgaggaagaagac
gaggaattctacaccgagggatcccacgacttgctgatcgctcgtcgacgcatggccgcc
ttttcactccagcgcgccaaggagcgccttcgccagcagtgccaggaatccacggcatcc
atgcaagaagtcgctgcgcttcgtcagacggtgctggagccgctcaagtcgtatacgagt
ctcggcacccaagtcgctgccgagcgccccgtgtccgtcgtgcgcttctctcccgacgcc
tctctcttggccacaggcagctggtcaggcaaggcgtctctatggagtatacccaacgcc
acgccatgcggcaccatgcacgcccacgaagaccgtatcacgggcctcgcatggcatcca
cgcgccacgatcggccagccacgctccgcgatccatatggctaccggcgccggcgacggc
gccttatgcacatggtcactcgaaagtgaacgacccctctccgtgctgcgcggacacgag
gcgcgcgtgtgccgcattgcattccatcctatgggcgattacttggccagtgcgtcgttt
gacggcacatggcgactgtgggacgtcgcgcgcgcccaagagctgatgctgcaggaggga
cacagccgcgaagtgtacgcgatcgattttcaaggcgacggcgcactcgtcgcgtctggc
ggcctcgatgccatcggtcgcgtgtgggacacgcgcaccggacgcacggccatggtccta
gatggccatgcgcgcgagattctcggactggccttcgcaccgaatgggtatcagctcgtt
tcgacatcgggagacgacacggcccgtgtttgggacctgcgcatgctccgcagcttgtac
acgattcccgcgcaccactcgtccgtcgccgatgtgcgcttctttcacgcagcagaaagc
tcccttccttcgatggatgaagacggctcggatacccactcgctcagccgctcgggactg
tactttgccacggccggctacgatggcctcgtcaagatatggagcgccgacgactggcag
ctggtcaagtcgctgcgtggcgacgccggcaaggtcatgagcgtcgacatcagctccgat
ggccagtacgtggccagtggcgaatgggctcgcactttcaagctttggggacatgtatag

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