Malassezia restricta: MRET_4324
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Entry
MRET_4324 CDS
T06113
Name
(RefSeq) exosome complex component RRP4
KO
K03679
exosome complex component RRP4
Organism
mrt
Malassezia restricta
Pathway
mrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MRET_4324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrt03019
]
MRET_4324
Messenger RNA biogenesis [BR:
mrt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MRET_4324
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MRET_4324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
RRP40_S1
EXOSC1
GP70
Motif
Other DBs
NCBI-GeneID:
38741090
NCBI-ProteinID:
XP_027486816
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All DBs
Position
IX:complement(49255..50250)
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AA seq
331 aa
AA seq
DB search
MTASPFRIVSAGECSAPVASYTYASGSARVPQSKRVTDDELEDAHENRSAVYVVTGQAIS
STTQYIRGHGTYLDTENSDIVSVVCGTAERVSKLLMVRPIRTRYRPEVGDLVVGRITEVQ
SRRWKVDIGSQTDASLPLSAINLPGGVQRKKLETDELQMRTFFQEGDLVSAEVQTVAVDG
SVTIHTRSLRYGKLRNGALVVMPPPLIRRHASHFVSIMPLPDHGIDLILSLNGLVWVSKH
VEYDDAMMHGMSGRIAPDKVYSVYSDVNDRLSKATRGSIALVCMVLASMAHYSIPVIQTD
LEHACVWARQHLDMSDPVAFAQGIAKLLMDR
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgacagcctcgccgttccggatcgtgtcggcaggcgagtgttccgcgccggtggcctcg
tatacctatgcatcaggctcggcgcgcgtaccacagagcaagcgagtgacggacgatgaa
ctggaggatgcgcatgaaaaccggtccgcggtctacgtggtgacgggccaggccatctct
tcgacgacgcagtacattcgcggccatggcacgtacctcgacacggaaaactcagatatc
gtgtcggtcgtatgtggcacggcagagcgtgtgagcaaattgctcatggtgcgtccgatc
cgcacacggtaccgccctgaggtgggcgacctcgtcgtcgggcgcatcacggaagtgcag
tcgcggcgatggaaggtggatatcgggtcgcagacagatgcgtcgctgccgctctcggct
atcaacctgccgggtggtgtgcagcgcaagaagctcgaaacggacgagctgcagatgcgc
acatttttccaggaaggcgacctcgtgtcagccgaggtgcagacggtggctgtggatggc
agcgtgacgattcatacccgctcattgcgctacggaaagctgcggaatggtgcgctcgtc
gtcatgcctccgccgctcattcgccgtcacgcgtctcactttgtctcgatcatgccgctg
cctgaccatggcatcgacctcattttgtcgctcaatggcctcgtgtgggtctcgaagcac
gtggagtatgacgatgcgatgatgcatggtatgagtgggcgcattgcgccagacaaggtg
tacagcgtgtacagcgacgtgaatgaccgcctatctaaagctacacgtggatccatcgcg
ctcgtctgtatggtattggcatcgatggcacattacagcatccctgtgatacagaccgac
ctggagcatgcgtgcgtgtgggcacggcagcatctcgacatgtcggaccctgtggcgttc
gcgcagggtattgcgaagctgctcatggaccgctag
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