Methanobrevibacter ruminantium: mru_0426
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Entry
mru_0426 CDS
T01166
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mru
Methanobrevibacter ruminantium
Brite
KEGG Orthology (KO) [BR:
mru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mru03016
]
mru_0426
Enzymes [BR:
mru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
mru_0426
Transfer RNA biogenesis [BR:
mru03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
mru_0426
Prokaryotic type
tRNA splicing ligases
mru_0426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADC46277
UniProt:
D3E0N1
LinkDB
All DBs
Position
606302..607750
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AA seq
482 aa
AA seq
DB search
MSIRESLVKVRENVWELPSDYKKEMRVPGRMYLDDEAVKTIEEGALEQVSNVACMPGIQG
ASIAMPDIHFGYGFSIGGVGAFNYNNGVVSPGGVGFDINCGVRMLRTNLTEDEIKPHLKE
LTEVLFKNIPSGVGSKGQIRLKDNEINEVLDYGAWWAVERGFGWEEDLKFLEENGRMEEA
ESEVVSKKAKKRGVPQLGSLGSGNHFLEVQKIEEVYDDNVAKAFGLEPGNVTIMIHSGSR
GCGHQICSDYLRKMDKAYRNYKIKLPDRQLACAPIDSPEATGYLKAMAAGANYAWANRQM
MSHWVRQSFEEVFKRDAEDMGMSTIYDVAHNIAKKEVHKVKNSHMEVLVHRKGATRAFCP
GRREIPKEYRDVGQPVLIPGTMGTASYILHGTDVAMEETFGSTAHGAGRVLSRTAAKKQY
TAKDIEKELNDKGIHVKANSAPVLAEEAPGAYKNVDSVVKTSHDAGIAKLVAKVVPLAVT
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattagagaaagtcttgtaaaagttagagaaaatgtttgggaacttccaagtgac
tataagaaggaaatgagagttcctggaaggatgtatcttgatgatgaagctgtaaagacc
attgaagaaggtgctcttgaacaggtttcaaatgtggcctgcatgcctggtattcaaggg
gcatcaatcgccatgcctgatattcacttcggatacggtttcagcataggaggagtaggt
gcattcaattataataacggtgttgtaagtcctggaggagtgggctttgacattaactgt
ggagtaagaatgcttaggaccaatcttactgaagatgaaatcaagccgcatcttaaggag
cttacagaggttctctttaaaaacattccatcaggtgttggaagcaaaggtcagataagg
cttaaggacaatgagatcaatgaggttcttgattatggtgcctggtgggcagttgaacgt
ggattcggctgggaagaagacctaaaattccttgaagagaatgggagaatggaagaggcc
gaatctgaagtcgtaagcaaaaaggctaaaaaaagaggagttcctcaattaggttcatta
ggttctggaaaccacttccttgaggttcaaaagattgaggaagtctatgacgataatgtt
gcaaaggcatttggtctagagcctggaaatgttacaataatgattcacagcggttcaaga
ggctgcggacaccaaatctgttctgattatttaagaaagatggataaggcttatagaaac
tataagatcaagcttccagacagacaattggcatgtgctcctattgactctccagaggct
acaggataccttaaggctatggctgcaggtgcaaactatgcttgggctaaccgtcagatg
atgtcccattgggtaaggcaatcctttgaagaggtatttaagagggatgcagaagatatg
ggaatgagcacaatctatgatgttgcccataacattgctaaaaaggaagtccataaggtt
aaaaattcccatatggaagttcttgttcacagaaaaggtgcaacccgtgcattctgtcct
ggaagacgtgagattcctaaggaatatcgtgatgtaggtcagcctgtccttattcctgga
accatgggaaccgcttcatatatcttgcatggtactgatgttgctatggaagagaccttt
ggatccactgcacatggtgctggaagggtattgtccagaactgctgctaaaaagcaatac
actgctaaggatattgaaaaagaattgaatgataagggaattcatgtaaaagctaattca
gctcctgtgttagctgaagaggctcctggtgcatataagaatgtggattctgttgttaag
acctctcacgatgctggcattgctaagctggttgctaaggttgttccactagcagttaca
aaaggatag
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