Methanobrevibacter ruminantium: mru_1184
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Entry
mru_1184 CDS
T01166
Name
(GenBank) ATP-dependent DNA helicase UvrD/REP family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mru
Methanobrevibacter ruminantium
Pathway
mru03420
Nucleotide excision repair
mru03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
mru_1184
03430 Mismatch repair
mru_1184
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mru03400
]
mru_1184
Enzymes [BR:
mru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
mru_1184
DNA repair and recombination proteins [BR:
mru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
mru_1184
MMR (mismatch excision repair)
Other MMR factors
mru_1184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
Beta-prop_RIG_2nd
AAA_11
AAA_30
DUF2345
Motif
Other DBs
NCBI-ProteinID:
ADC47034
UniProt:
D3E3C3
LinkDB
All DBs
Position
complement(1565539..1570236)
Genome browser
AA seq
1565 aa
AA seq
DB search
MSIDLNKNQKRAAYYNGDKYLVIEAGPGAGKTRVLIERIKFLINEEKVEPSSLLVITFTR
KAAEELKERLYKDIDESVVSMMQISTIHAFCRVILSEIGEYNTRVLGDSVNEKQKMFLNK
YKKDLGFVNECHIRQNEIFNLIDKYGEYATFKVDSKKLVDYIERNTKIDPEYIDFVNEYM
KENDGRYPFDEVMANDAYKKSRTNALYLQIAKSYPKYLELLDEKGFSDFDQMQIKTLNYL
KTNPNTIYKNVLVDEFQDTDPVQMKIFEILMKNADSFTVVGDIDQSIYGFRGANKNYFEY
LYNNYDDRVYKVNLNVNYRSANQIIDISEDFIKSQRAEGAKQDKALGARDLDRNTYFLVN
ENSESEAKAIFEMIRYLHDSGKIENYNEIAILSRSIRFSNTAQDLIQLFIDNNIPYHVRG
VPDLFDRPEIRSVITLIHHLIEDTNPHNHKFDLWELEWLNLKAYTGESFNQVLFNLSDET
KNILNSIQEEFEENVLKEEKRAYLKVTGKKSHKYVFKRVFERDEKVLIELFKNIERPILS
NENLIRYGVKNKQDLEFFRRLNDLKAYFNSEEYMDSEDTILDIYMKLLTDVCNYLTEDFI
NDPINRDELKNLAILSNTFHNYELIVDNKNLKGAYYFLRYNIAGYSTDNDESEGVQLMTV
HKSKGLEFPVVILLSLNHKKFPSQYKDEYDRFYTPNSCLEYKNYDSKEEEIQDYLEEEDR
IVYVAMTRAQDILVLSNLIKETPELEGLKAELNDNLSQIEKIEIIKDIPKGHIKIHDLIN
RNLSSCKFLEDDFSQLPKTVCEKPQVKKEDFLNLSFYSLENYVACPFKYKLMHDINFSES
TMEFNKLRGLFVHNLLETINNRIRSNGNRYIGDDEVLAIFERFQDSFRFENLRLSKKEYD
IIKNDVLYYYNTFGKDFNILNTELSFSIKKEYYGLSGIIDLIYKTKDGKMGILDYKNTER
ISRHYVQNYIKQVYTYMIALKDSFEIDELRIYAIKARKMISVDINQKSLDILLEELDNVS
LNIKKEVFECNFGEGCLKCSFSKICVKANNDDVSVFDFNNEDTLSFRNKFYQNLPDYEII
DLKDRYWKDIDFDSDDETKFDVDISADDLASISAKEGVSVSANEGIPISAREGVSVSANE
GIPISAKEGVSVSDKDNDLSVSANQIKNLNNSSDDKHLGADFKSKKDSFKSEMKSPSSKK
DSSKSKKKSYKSKESSKSSKEPFISSYSKYLDLKSIPKKYKNFLKNDYSKDIDLFEYDDD
LSLEENILRKYILKKKGLKLLKKELYDESEDYYKKLIHNSYFKEDYYPYKQLMKVYHKTK
KYDKEADIIRDFFKSSVYANKYQFLYFKYKNRKLPKRARIKHNELKDLIKNYVNLLKDSD
LSNNSIPNADRLKKDKNRLKILSDEEEFYNHKRSYYTNIADGLYEEKLNQEAFDLYAMAI
YKYKEKSFRYYQRLASIYRRTNNYKHELLVIMEYFNKSNKIHRTKSSDKWFKQRLYSTKQ
LIGDENAIRQIENIVCKKGYNLKADYALNYLNHDLDEYYCLKNLDKELNYIISSNEDIFT
LHKKK
NT seq
4698 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattgatttaaataaaaaccaaaaaagggctgcctattacaatggagacaagtac
ttggtcatagaagcaggtccaggcgctgggaaaacacgtgttttaatagaaagaatcaag
tttctcataaatgaagagaaggtagagccttcaagccttttagttattacattcacacgc
aaagctgcagaagagcttaaagaacgtttatataaggatattgatgaatctgtagtaagc
atgatgcaaatatcaaccatacatgctttttgcagagtgattctctcagagattggggaa
tacaatactcgtgtcttgggagatagcgttaacgaaaaacagaaaatgtttttaaacaaa
tataagaaagacttaggctttgttaatgagtgtcacatccgccagaatgaaatatttaac
ctaatagataaatatggcgaatacgccacctttaaggtagatagtaaaaaattggttgac
tatatagaaaggaatactaaaattgaccctgaatatatagattttgtaaatgaatatatg
aaggagaatgatggaagatatccttttgatgaggtaatggctaatgatgcctataagaaa
tcccgtacaaatgcattgtatctgcaaatagcaaagtcatatcctaaatatctggagctt
ttggatgaaaagggattcagcgattttgatcagatgcaaatcaaaaccttaaactatttg
aaaaccaatccaaacaccatctacaagaatgttttggttgacgagtttcaggatacagat
cctgtccaaatgaagatatttgaaattctaatgaaaaatgcagattcctttactgttgtg
ggagatatagaccaaagcatatatggattccggggagccaataagaattattttgaatat
ctatacaataattatgacgatagggtctacaaggtgaacttaaatgtaaactaccgttca
gcaaatcaaatcattgacataagcgaggatttcatcaagtctcaaagggctgagggagca
aagcaggacaaggctcttggcgcacgggatttggatagaaacacttattttcttgtaaat
gaaaacagcgaaagcgaagcaaaggccatttttgaaatgattcgatatctccatgacagc
gggaagattgaaaattataatgagattgctatcttatcccgttccataaggtttagcaac
actgcccaagacctaatccaattatttattgataacaacatcccttatcatgtcaggggg
gttccagatctctttgaccggcctgaaataaggtcagtgatcacattgattcaccatctt
atagaggatacaaatccccataaccataaatttgacctgtgggaattggaatggctaaat
cttaaggcatatactggagaaagcttcaatcaggttttatttaacctatctgatgaaact
aaaaatatcttaaatagtatacaagaagaatttgaagagaatgtcttaaaggaagaaaaa
agagcttatttaaaagttacaggcaagaagtctcataaatatgtctttaaaagagtcttt
gaaagggatgagaaggttttaattgaattatttaaaaacattgaaaggcctatcctaagc
aatgagaatctgattagatacggggtaaaaaataagcaggatttggagttctttagaaga
ttgaatgacttgaaagcttacttcaacagtgaagagtatatggactccgaagacactatt
ttggatatctatatgaaattgctgacagatgtctgcaattatttgactgaagatttcatt
aatgaccctattaatagggatgagcttaaaaatctggcaatcctaagcaacactttccat
aattatgagttgattgtagacaataagaatttgaagggagcatactatttcttaagatat
aacatagctggctacagcacagataatgatgaatccgaaggggttcagcttatgacagtc
cataagtctaaaggattggaatttcctgtagtcattttactgtcattgaatcataagaag
ttcccaagccaatataaggatgaatatgataggttttacactccaaactcctgtttggaa
tataagaattacgattccaaggaagaggaaattcaagactatctagaggaagaggataga
atagtctatgtggctatgacaagggctcaggatattttagttctatctaatctaatcaag
gaaactcctgaattagaagggttaaaagcagaattgaatgacaatctttctcaaattgaa
aagatagaaataatcaaggacattcctaaagggcatattaagattcatgacttgatcaat
aggaatctctcaagctgcaagtttttggaagatgactttagccagcttccaaagacggtt
tgtgaaaagcctcaagttaaaaaggaggatttccttaatttaagcttttattcccttgag
aattatgttgcctgtcctttcaagtataaactgatgcatgacattaatttcagcgaatcc
acaatggaattcaataagctaagaggcttgtttgtacataatttgcttgaaacgatcaac
aatagaatcaggtccaacggaaacagatatattggagatgatgaggtcttggctatcttt
gaaaggtttcaagactccttccgctttgaaaacttaagattgtcaaagaaggaatatgat
attataaaaaatgatgttctttattattacaatacctttggaaaggatttcaatatatta
aacacagagctttcatttagcattaaaaaggaatattatggattgtcaggcattattgac
ctaatctataagaccaaagatggaaagatgggcattttggattataagaacactgaacgc
atatcaaggcattatgttcaaaattatattaagcaggtctatacctatatgattgcatta
aaggatagttttgaaatcgatgagcttcggatatatgcaataaaagcaagaaagatgata
tctgttgatataaatcagaagtcccttgatattcttttagaagagcttgataatgtttca
ttgaatattaaaaaagaagtattcgaatgtaattttggagagggctgcttaaaatgcagt
ttctcaaagatatgcgttaaggcaaataatgatgacgtttctgtttttgactttaataat
gaggacactttatcttttagaaataagttctatcagaacttgccagattatgaaataatt
gatttaaaagacagatattggaaagatattgattttgattcagatgatgaaactaagttt
gatgttgatattagtgcagatgatttagcttcaatctctgctaaagagggtgtttctgta
tctgctaatgaaggtattcctatatctgcaagagagggtgtttctgtatctgctaatgaa
ggtattcctatatctgctaaagagggtgtttctgtatctgataaggataatgatttgtct
gtatctgctaatcaaattaaaaatttaaataattcatctgatgataaacatcttggtgcg
gatttcaaatctaaaaaagattcatttaaatcagaaatgaaatctcctagttctaaaaaa
gattcatctaaatccaaaaagaaatcttataaatctaaggaatcctctaaatcttcaaaa
gaaccatttattagttcttattcaaaatatttggatttaaagtccattcctaaaaaatat
aagaatttccttaaaaatgattattccaaggacattgatctttttgaatatgatgatgat
ttgtctcttgaagagaacattttaagaaaatatatcctaaagaaaaaaggattgaaattg
cttaaaaaagaactatatgatgaatctgaagattattataaaaaattaatacacaattcc
tattttaaagaagattactatccatataagcaattaatgaaagtctatcataagactaaa
aaatatgataaagaagctgatattataagagatttcttcaaatcaagcgtttatgccaat
aaatatcaattcttatatttcaaatataagaataggaaattgcctaaaagagctagaata
aagcataatgaactaaaagatttaattaaaaattatgtaaatctattaaaagattctgat
ttatctaataattctattcctaatgctgatagattgaaaaaagataagaacagactaaaa
atcctatcagatgaagaggaattctataatcataaaaggtcctattataccaatattgcc
gatggattatatgaagaaaagctcaatcaggaagcttttgacttatatgctatggcaatt
tataagtacaaagaaaagagtttcagatattatcaaagattggctagtatttataggcgc
actaataattataaacatgagttgctggttattatggaatattttaataaaagcaataag
atccatagaacaaaaagcagcgacaaatggtttaagcaacgtttatattccactaaacaa
ctaattggggatgagaatgcaattaggcagattgaaaatattgtttgcaaaaaaggatac
aatctaaaagcagattatgctttaaattatttaaatcatgatttggatgaatattactgt
ttgaaaaatttagataaggaattaaattatattatttcaagcaatgaggacatttttaca
cttcataaaaagaaataa
DBGET
integrated database retrieval system
