Methanobrevibacter ruminantium: mru_1311
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Entry
mru_1311 CDS
T01166
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mru
Methanobrevibacter ruminantium
Brite
KEGG Orthology (KO) [BR:
mru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mru03016
]
mru_1311
Enzymes [BR:
mru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
mru_1311
Transfer RNA biogenesis [BR:
mru03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
mru_1311
Prokaryotic type
tRNA splicing ligases
mru_1311
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADC47161
UniProt:
D3E3Q0
LinkDB
All DBs
Position
complement(1746817..1747929)
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AA seq
370 aa
AA seq
DB search
MFELSGKYNTAKVFADNIDNDSVSQIIQFLNQPIAKDQSIRMMPDVHAGSNCVIGTTMTI
TDKAVPNLVGSDIGCGMETVYLDTDEIDFNRFDEIVRKYVPHGYDIRENPHPYIKKLRLT
EMRCYFDLEAGSQGNFSLGTLGGGNHFIEVGKDKEENLVLVVHTGSRRIGADVCEYYQNQ
ALKSFKRMHKTATNKELIYCEGQLFEDYIHDMKIMQEFASWNRKAIIETILSHYGMDYTD
SFTTIHNYIDTDHNQMILRKGAVSAYKGEKLLIPINMREGSLICKGKGNKDWNCSAPHGA
GRLMSRREAKDKISLKEYENAMKGIFTNSVNRGTIDESPMAYKPIEAIVNNIQDTVEIID
IIKPVYNFKA
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaattaagtggaaagtacaatacagctaaagtctttgcagacaatatagacaat
gacagcgtatctcaaataattcaatttctcaatcagcctatagctaaggaccaatccatc
cgaatgatgccagatgtccatgcaggaagcaattgtgtaatcggaaccacaatgacaatc
acagacaaggcagttccaaaccttgtaggctcagacattggctgcggtatggaaacagtc
tatcttgacacagatgaaatagatttcaatcgctttgatgagatagtccgcaaatacgtc
cctcatggctatgacattagggaaaatcctcatccatacataaagaaactaagactcact
gaaatgagatgctatttcgatcttgaagcaggaagccaaggcaatttttccttaggaacc
cttggaggaggaaatcacttcattgaagttggaaaggacaaagaggaaaacttagtcctt
gtcgtccacacaggaagtagaagaatcggtgcagacgtatgcgaatactatcaaaaccag
gcattgaagagctttaaaagaatgcataagactgcaacaaacaaggaactcatatactgt
gaaggccaattgtttgaggactatatccatgacatgaagataatgcaggaatttgcaagc
tggaacaggaaggcaatcatcgaaaccattctcagccattatggaatggactatacagac
agctttacaacaattcacaattacatagacacagaccataatcaaatgatcttgcgaaaa
ggagcggtttcagcttacaaaggagaaaagctattgattccaattaatatgagagaaggt
tccttaatctgtaagggaaaagggaataaggattggaattgctctgctccacatggtgcg
ggaaggctgatgagcagaagagaggcaaaggacaagatctctttaaaagaatatgaaaat
gcaatgaaaggaatttttacaaattcagtaaacagaggaaccattgatgagtctccaatg
gcttataagccaattgaagccattgtaaacaatattcaagacactgttgaaattattgat
attattaagcctgtttataactttaaggcttaa
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