Mucilaginibacter rubeus: DEO27_018855
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Entry
DEO27_018855 CDS
T06362
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mrub
Mucilaginibacter rubeus
Pathway
mrub03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mrub00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DEO27_018855 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrub03021
]
DEO27_018855 (rpoC)
03400 DNA repair and recombination proteins [BR:
mrub03400
]
DEO27_018855 (rpoC)
Enzymes [BR:
mrub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DEO27_018855 (rpoC)
Transcription machinery [BR:
mrub03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DEO27_018855 (rpoC)
DNA repair and recombination proteins [BR:
mrub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DEO27_018855 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QEM12005
UniProt:
A0A5C1I251
LinkDB
All DBs
Position
complement(4794804..4799093)
Genome browser
AA seq
1429 aa
AA seq
DB search
MSYKKDNKIKSNFTTITISLASPESILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHINLVVPVAHIWYFRSLPNKI
GYLLGLPTKRLDLIIYYERYVVIQPGIKEADGINKMDFLTEEEYLDVLDTLPKENQYLDD
KDPQKFVAKMGAEALEELLKRLDLDELSFSLRHQAANETSQQRKNEALKRLQVVEAFRDA
KTRIENNPEWMIVKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLKLHECGLPKDMAAELFKPFIIRKMIERGVVKTVKSAKKIVDRKDP
LVWDILENVLKGHPVLLNRAPTLHRLGIQSFQPKLVEGKAIQLHPLTCTAFNADFDGDQM
AVHVPLGNAAILEAQILMLASHNILNPANGTPITVPSQDMVLGLYYITKGRKTDETRVVK
GQGLTFYSAEEVIIAYNEKKLDLHAFIKVKALVKERDGKIVNKIIDTTVGRVLFNQHVPV
EVGYINELLTKKSLRDIIGEVVKITGMARAAQFLDDIKELGFKMAFQGGLSFNLKDINIP
AEKVTLIDTASKQVDEVMNNYNMGFITNNERYNQIIDIWTRINNRLTANVMDILSNDNQG
FNSVYMMLDSGARGSKEQIRQLAGMRGLMAKPQKSGSGGEIIENPILSNFKEGLSVLEYF
ISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVGEVDCGTLRGIYTTALKDNEDIVE
PLYDRILGRTTLHDVHDPITNELLAVAGQDITEEVAKKIENSPLEGIEIRSVLTCESKRG
VCALCYGRNLASGKRVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESQINAK
FDGIIEFENVRTVTYETAEDGAVDVVLGRSGEFRIIEAGSNKVIVTNNIPYGSYLYVKDG
SKITKGDRICSWDPYNAVIISEFAGIAQFDAVLEGITFREESDEQTGHREKVIIDTRDKT
KNPAIQIADNKGNIIKGYNIPVGAHIAVDEGDRLQTGQVIAKIPRSTGKTRDITGGLPRV
TELFEARNPSNPAVVTEIDGVVTLGGVKRGNREITIESKDGQVKKYLVPLSKHILVQDND
FVKAGMPLSDGSISPSDILAIKGPAAVQEYLVNGIQEVYRLQGVKINDKHFEVIVHQMMQ
KVSIEDAGDTRFLEREAVDGWDFMTENDEIYDKKVVTDPGDSTTLKSGQIVSLRRLRDEN
SVLKRRDLKLVEVRDAIPATSSPILQGITRASLGTKSFISAASFQETTKVLNEAAIAGKK
DNMLGLKENVIVGHLIPSGTGLREYENIRVGSQEEFDRLMASKAEELEA
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaggataataaaatcaaaagtaactttaccaccattaccatcagttta
gcctctcctgagtctatccttgagcgttcaagcggtgaagttttaaagccggaaaccatt
aactaccgtacttacaaacctgagcgtgatggtttgttctgcgagcgtatttttggtccg
gttaaggattatgagtgccattgcggtaaatacaaacgtatccgttacaaaggtatcgtg
tgcgaccgttgcggtgttgaagtaaccgaaaagaaagtacgtcgtgagcgtatgggccac
atcaacctggtggtgcctgttgcgcacatctggtacttccgctcattaccaaacaaaata
ggttatttattaggcctgcctacaaaaaggcttgaccttatcatatactacgagcgttac
gtagttatacagccaggtattaaagaagcagacggaatcaacaaaatggatttccttact
gaagaagaataccttgacgtattagatacccttccaaaagaaaaccagtaccttgacgac
aaagatcctcagaaatttgttgccaaaatgggtgccgaggccttggaagaattattaaaa
cgccttgaccttgatgaattatcattcagcctgcgtcaccaggcagctaacgaaacttct
cagcaacgtaaaaacgaagctttaaaacgtttgcaggttgttgaagctttccgtgatgct
aaaaccaggatcgagaataaccctgagtggatgatcgttaagatcgttccggttatccca
cctgaactgcgtccgttggtaccattggaaggtggccgttttgctacttcagatttgaat
gacctttaccgtcgtgtaattatccgtaacaaccgtttaaaacgtttgatcgagatcaaa
gcaccagaggtgattttacgtaacgagaaacgtatgttgcaggaagctgtggattcgtta
ttcgataactcacgtaaagttaacgcggtaaaaactgaaggtaaccgtgctttgaaatca
ctttcagatatcctgaaaggtaaacaaggccgtttccgtcaaaacttattaggtaaacgt
gtggattactctgcgcgttcggtaattgttgtaggtcctaaccttaaattacacgagtgc
ggtttaccaaaagatatggcagccgagttgtttaaaccatttatcatccgcaaaatgatt
gagcgtggtgtggttaaaacagtaaaatctgccaaaaagatagttgaccgtaaagaccca
ttagtttgggatattttggaaaacgtgttgaaaggacaccctgtattactaaaccgtgcg
cctacgctgcacaggttgggtatccagtcgttccagccaaaactggttgaaggtaaagcg
atccaattgcacccattaacctgtacagcattcaacgcggattttgacggtgaccagatg
gccgttcacgtaccacttggtaacgcggcaattttggaagcccagatcctgatgcttgct
tcgcacaacatccttaaccctgccaacggtacacctattactgtaccatctcaggacatg
gtgcttggtttgtactacataaccaaaggccgtaaaaccgacgaaacacgcgtggttaaa
ggacaaggcttaactttttactctgcagaggaagtaattatcgcttataacgagaaaaaa
cttgacctgcatgcatttatcaaggttaaagctttggttaaagagcgcgatggcaaaatc
gtaaataaaattattgatactactgtaggccgcgtgttgtttaaccagcatgtacctgta
gaagtaggttatatcaatgagctgcttaccaaaaaatcacttcgtgatatcattggtgag
gtagtgaaaatcaccggtatggcacgtgccgcccagttccttgatgatattaaggagtta
ggctttaaaatggcattccagggtggtttatcatttaacctgaaggatatcaatatccct
gcagaaaaagtaaccctgattgatacagcttctaagcaagttgatgaggtaatgaacaac
tataacatgggtttcattaccaacaacgagcgttacaaccagatcatcgatatctggaca
cgtatcaacaaccgcttaactgctaacgtaatggacatcctgagcaacgataaccagggc
ttcaactctgtttacatgatgcttgactcaggtgcccgtggttctaaagagcagatccgt
cagcttgcaggtatgcgtggtttgatggcgaaacctcagaaatcaggttcaggtggcgag
attatcgaaaacccgatcctttcaaactttaaagaaggtttgtcggtattggagtacttt
atctcaacccacggtgctcgtaaaggtttggcggatacggcgttaaaaacagcggatgct
ggttacttaacacgtaggttgcatgacgttgcccaggacatgattgttggtgaggttgat
tgcggtactttaagaggtatctacacaactgcactgaaagataacgaggatattgttgag
ccattatatgaccgtattttaggtcgtactacgcttcatgatgttcatgaccctatcact
aacgaactgttagcagtagccggtcaggacattaccgaagaggttgccaaaaagatcgag
aattctccgttagaaggtatcgagatccgttcggtattaacctgcgaaagcaaacgtggc
gtatgcgcattgtgctacggccgtaaccttgcaagcggtaaacgtgtgcaaaaaggcgag
gctgttggtgtaatcgcagcacagtcaatcggtgagccgggtacacagttaacacttcgt
acattccacgtgggtggtaccgcgtcaaacatcgcggctgaatctcagatcaacgctaag
tttgatggtatcatcgagtttgagaacgtacgtactgtaacttatgaaactgctgaagat
ggtgctgttgatgtggtattaggccgttcgggcgagttccgtatcatcgaagccggaagc
aataaagtaattgttaccaacaacattccatacggttcatacctgtatgtgaaagatggt
agcaagatcaccaaaggcgaccgtatctgttcatgggatccgtacaacgcggtaattatc
tctgagtttgcaggtattgcccagtttgatgctgtattggaaggtatcactttccgtgaa
gaatctgacgagcaaacaggccaccgcgaaaaagtgatcatcgataccagggataaaaca
aaaaaccctgctatccagattgccgataataaagggaacatcattaaaggatataatatc
ccggtaggcgcccacatcgctgttgatgaaggcgacaggctgcaaacaggtcaggttatt
gctaaaattcctcgttcaaccggtaaaacgcgagatattacaggtggtttaccacgtgta
accgagttatttgaagcacgtaacccttcaaaccctgctgtagtaactgaaattgacggt
gtggtaactttaggtggtgttaaacgtggtaaccgcgaaattacaatcgaatcaaaagac
ggccaggttaaaaaataccttgtaccactttcaaaacacatccttgtacaggataatgac
tttgttaaagctggtatgccattgtcagatggttcaatttcaccttcagacatccttgct
attaaaggacctgcggcggtacaggaataccttgttaacggtatccaggaagtttaccgc
ttacagggtgtgaaaattaacgataaacactttgaagttatcgttcaccagatgatgcag
aaagtatctatcgaagatgcgggcgatacccgtttcttagagcgtgaagctgttgacgga
tgggatttcatgaccgagaatgatgaaatttacgacaagaaagttgttactgatccgggt
gattcaactacgttgaaatctggccagatagtttcattacgtcgtttacgcgatgaaaac
tcggtattgaaacgccgcgaccttaaactggttgaagtgcgtgacgccatcccagcaaca
tcgagcccgatattgcaaggtatcaccagggcgtcgttaggcaccaagtcgtttatctcg
gcagcatcgttccaggaaactaccaaagtactgaacgaagcagctatcgcaggtaaaaaa
gacaacatgcttggcctgaaagaaaacgttatcgtaggtcacttaataccttcaggtacc
ggtttacgcgaatacgaaaatatccgtgtaggttcacaagaggagtttgaccgcctgatg
gcttcaaaagcagaagagttggaagcttaa
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integrated database retrieval system
