Mucilaginibacter rubeus: DEO27_023750
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Entry
DEO27_023750 CDS
T06362
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mrub
Mucilaginibacter rubeus
Brite
KEGG Orthology (KO) [BR:
mrub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mrub03016
]
DEO27_023750
Enzymes [BR:
mrub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DEO27_023750
Transfer RNA biogenesis [BR:
mrub03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DEO27_023750
Prokaryotic type
tRNA splicing ligases
DEO27_023750
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QEM12897
UniProt:
A0A5C1I487
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All DBs
Position
5947108..5948508
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AA seq
466 aa
AA seq
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MGNLKTKELTQIGYTDNKQRSLAVNMIAKHFKHYSKAEAINLLTSIPLQPDSFLNNEITG
KIAETFISNIHEAISTSYELKDQHAPLNIFGEADIEPSAIKQMELALKLPISLQGALMPD
AHSGYGLPIGGVLAAKNAVIPYGVGMDIGCRMALSIIDADERFLNRYAHQIKQAINDHTH
FGIDGGLTTSQDHEVLDSPQFHQTPLLKKLHGKAVKQLGSSGSGNHFVEFGLMEIYECNA
LGLPPKQYLALLSHSGSRGLGANIARHYTQIAMETCKLPREAQPLAWLDLDTEAGQEYWL
SMNLAGDYAKACHDRIHANLLKALGLKALAKVENHHNFAWKDILANGTEAIIHRKGATPA
HVGELGIIPGSMATPAYLVMGKGNDSALYSASHGAGRAMSRKEARESTTGSAVKKMLADA
GVTLIGGSLEENPLAYKNIETVIAAQQQLIEVQGKFYPRIVRMDKE
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgggcaatttaaaaacaaaagaattaacacagataggctacactgacaacaaacagcgt
agcctcgccgtgaatatgatagccaaacactttaagcattacagcaaagcagaggcaatt
aatttattaaccagtatcccgctgcaaccggattcttttctgaacaatgaaataaccgga
aaaatagccgaaacatttatcagcaatatacacgaagcgataagcacatcttacgaatta
aaagatcaacacgcgccgttaaacattttcggcgaagcagacattgaaccatccgccata
aaacagatggaacttgcacttaagctaccgattagcttacagggagcattgatgcccgac
gcacatagcggctatggcctgcccatcggcggtgtactcgccgctaaaaacgcggtgatc
ccttatggtgtaggcatggatatcggctgtcggatggccctatccattattgatgccgat
gaacgatttttaaaccgttatgcccatcaaataaaacaagctataaatgaccatacacat
tttggtattgatggaggtttaaccacttctcaagatcacgaagtgcttgacagcccccaa
ttccatcaaacacctttgctaaaaaagctgcatggcaaagcagttaaacaattaggctca
tctggcagtggaaatcattttgtggagtttgggctgatggagatttacgaatgcaatgcc
ctcgggcttccacccaagcaatacctggctttgctgtcacattcgggcagtcgtggcttg
ggggccaatatcgcccggcattatacacagatagctatggaaacctgcaaacttccgcgc
gaagcacagccgctggcctggcttgatcttgatacagaagccggtcaagaatattggcta
agcatgaacctcgcaggcgattacgcaaaggcatgtcatgaccgtatccatgctaatttg
ctaaaggcactgggtttaaaagctctggccaaagttgaaaaccaccacaattttgcctgg
aaagatatattagcaaacgggactgaggcaattatccatcgtaagggagctacaccggcc
catgttggtgaactgggtattattcccggcagcatggctactcccgcttatttagtaatg
ggcaaaggaaatgatagtgccttatactctgcatcgcacggcgcgggcagggccatgagc
cgtaaggaggcacgggaaagtacaacaggctcagcagttaaaaaaatgttggcagatgca
ggtgtaacactgataggcggcagtctggaagaaaatccattggcctataaaaacatagaa
acggtgatagctgcccaacaacaattaattgaagtacagggtaagttttacccgcgtata
gtaagaatggataaagaataa
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