Mucilaginibacter rubeus: DEO27_029215
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Entry
DEO27_029215 CDS
T06362
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mrub
Mucilaginibacter rubeus
Pathway
mrub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DEO27_029215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrub03019
]
DEO27_029215
03009 Ribosome biogenesis [BR:
mrub03009
]
DEO27_029215
Enzymes [BR:
mrub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DEO27_029215
Messenger RNA biogenesis [BR:
mrub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DEO27_029215
Ribosome biogenesis [BR:
mrub03009
]
Prokaryotic type
rRNA helicases
DEO27_029215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QEM13926
UniProt:
A0A5C1I8A0
LinkDB
All DBs
Position
complement(7132227..7134071)
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AA seq
614 aa
AA seq
DB search
MNNPFIELGIRHDIVNAISELGFENPTPIQEQSIPVLLTGSNDFVGLAQTGTGKTAAFGL
PLLELLDFEENHPQALVLCPTRELCLQIANDIKNYAKKMNNVHVVAVYGGASIMDQLRQI
KRGVQIVVATPGRMLDIINRKAIDFSAVKYVVLDEADEMLNMGFQEDIDSILSTTPEEKK
TWLFSATMPAEVRRIAKKYMDNPFELTMGAKNTGNANIEHEYYIVRARDKYAAFKRIVDF
NPDIFGIVFCRTKIETQEIAESLIKDGYNADSLHGDLSQQQRDKVMKRYRERSLQLLIAT
DVAARGIDVNDVTHVINYSLPDEIENYTHRSGRTARAGKTGVSISIVNAKELGKIRQIER
VIGKKFVKAEIPTGFDVCEKQLFSIVHKVHNVTVNEEQIEQYLPRIYDEFKDFTKEDFIK
RFASIEFNRFLDYYKNAPDLNASIEEGRNRFEDRGERGNGVRGNFTRLFINLGSVDEFNR
GDLLGYICNTTKISGRTVGKIDVKGVYSFFEVQNEDVDKVMSSFKEAEYKGRPVRIEISG
EGTSERREGGYRGGERREGGGYRGGERREGGYRGGERREGGGYRGNERREHNGGGFRDFS
GKPREDRPERRRRF
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacccatttattgaactgggaatccgtcatgatattgttaatgccatctctgaa
ttaggatttgagaatcctacaccaatccaggagcagtcaatcccggtattgttaacaggc
agcaacgattttgtcggattagcccaaaccgggaccggaaaaactgctgcctttggccta
ccattgttggaactgcttgatttcgaagaaaatcatccacaggcacttgttttatgccca
acacgcgaactttgtttacagatcgcgaacgacattaagaattacgccaaaaaaatgaac
aacgtacatgttgttgcagtttatggtggtgcaagcattatggatcagttacgccagatc
aaacgcggcgtacagatcgtagttgctacaccaggtcgtatgcttgatatcataaaccgt
aaggctatagacttttcggctgtgaagtatgtagtattggatgaggctgatgaaatgctc
aacatgggctttcaggaagacattgatagtatcttatctaccacacccgaagagaaaaaa
acctggctattctcggccaccatgcctgcagaagttaggcggatcgccaaaaagtacatg
gacaatccgtttgagcttactatgggcgcaaaaaacactggtaatgccaatatcgagcat
gagtactatatagtacgtgcccgtgacaagtatgccgcgtttaaacgtattgttgacttt
aaccctgatatttttggtatcgtattttgccgtactaaaattgaaacccaggaaattgct
gagtcactgattaaagatggctataatgccgattcattacacggtgacctgtcacagcaa
caacgcgataaagtgatgaaacgctaccgtgagcgcagcctgcagttgttaattgctact
gacgttgcagcacgtggtatcgacgttaatgacgtaacacacgttattaactattcacta
cctgatgaaattgaaaactacacccaccgtagcggccgtacagcccgtgcaggtaaaaca
ggtgtatcaatctctatcgttaacgctaaagaattaggcaaaatccgtcagattgagcgt
gttattggtaaaaagtttgtaaaagccgaaatcccaacaggttttgatgtttgcgaaaaa
caattgttctctatcgttcacaaagtacataatgtaactgttaacgaagagcagattgag
caatacctgccacgtatttatgacgaatttaaagacttcactaaggaagatttcattaaa
cgttttgcttcaattgagtttaaccgtttccttgattattacaaaaacgctcctgacctg
aatgccagcatcgaagaaggccgtaacaggtttgaagatcgtggcgaacgcggtaacggc
gtacgtggcaactttacccgtttatttataaacttaggttcggttgacgagtttaaccgt
ggcgatttgttaggttacatctgcaacactaccaaaatcagcggccgtaccgtaggcaaa
atcgacgttaagggtgtgtactccttctttgaagttcagaacgaagatgttgataaagtg
atgagcagcttcaaagaagcagaatacaaaggtcgcccggtaaggatcgagatttcaggc
gaaggcacaagcgagcgccgtgaaggcggatatcgtggtggcgaacgccgcgaaggtggt
ggttaccgtggtggcgagcgtcgtgaaggcggataccgtggtggcgaacgtcgtgaaggc
ggtggttaccgtggcaacgagcgtcgcgaacacaatggtggcggtttccgtgatttttca
ggcaagccccgcgaagatcgtccggaacgcagaaggagattttaa
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