Mucilaginibacter rubeus: DEO27_030255
Help
Entry
DEO27_030255 CDS
T06362
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mrub
Mucilaginibacter rubeus
Pathway
mrub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DEO27_030255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrub03019
]
DEO27_030255
Enzymes [BR:
mrub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DEO27_030255
Messenger RNA biogenesis [BR:
mrub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DEO27_030255
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
UvrD-helicase
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QEM14121
UniProt:
A0A5C1IBP8
LinkDB
All DBs
Position
complement(7347890..7349257)
Genome browser
AA seq
455 aa
AA seq
DB search
MSFENLNLIEPILKALKTEGYTTPTPIQAQAIPIILKRHDLLGCAQTGTGKTAAFAIPTL
QLLHQDRIAHKEQKTIKALVLTPTRELALQIGESFTNYGRHTGLKNLVIFGGVSQNPQVD
ALRRGVDILVATPGRLLDLMNQRFINLEHVKFLILDEADRMLDMGFVNDVKKIIAKVPAK
RQTLFFSATMPKEIQSLADSILNNPEKVEVTPVSSTADTIQQKIYYVDKSDKKSLLIHIL
KDKNIKTALVFTRTKHGADKVVKDLTRAGITAEAIHGNKSQNARQRALTNFKNRTTRVLI
ATDIAARGIDIDELTHVINYELPNIPETYVHRIGRTGRAGADGIAFSFCDAEELEFLKDI
HKLIAKQIPVEEGHPYPLSPAAMAAKINEAPKKGGSGSGQRGGGGGRGGNRRSGGSGNSR
SAGNNRSGGNKKPGGNRSEASKPGGKSGMSGARKG
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcgaaaatttaaatttgattgagcctatcctcaaggctttaaaaacagaggga
tataccacacctactccaatacaggcgcaagccatccctattatattaaaacgccatgat
ttgcttggctgtgcccaaaccggtacaggcaaaaccgcggcgttcgctatccctacccta
cagctattgcaccaggacaggatagcccacaaagaacaaaaaaccattaaagctttggtt
ttaacacctacccgtgagctcgcccttcaaattggcgaaagctttaccaattacggcagg
catacaggccttaaaaacctggtcatatttggtggtgtgtcgcaaaacccacaggttgat
gccttgcgtcgtggtgttgatattttagttgcaaccccgggccgtttgctggatttaatg
aaccagcgttttattaacctggagcatgttaaattcctgatattggacgaggccgaccgc
atgctggatatgggctttgttaatgatgttaagaagatcattgccaaagtgcccgctaaa
aggcaaacgttgttcttttcggctaccatgccaaaagagatccaaagcctggcagatagc
atcctgaataatcccgaaaaagtagaagttaccccggtttcatccactgccgataccata
cagcaaaagatttattatgttgataagagcgataaaaaatcgctgctgatccacatcctg
aaagataaaaatattaaaaccgctctggtatttacgcgaaccaaacacggggccgacaaa
gttgtaaaagatttaacccgggcaggtattactgccgaagctatccacggcaataaatca
caaaatgcaaggcagcgcgcattaactaactttaaaaaccgcacaacgcgtgtattgata
gctaccgatatcgcggcccgtggtattgatattgatgagttaacacacgttatcaactac
gaattgcctaacatacccgaaacttacgtacaccgtattggccgtaccggtcgtgccggg
gcagatggtatagcgttttcattttgcgatgccgaggaactggagtttttgaaagatatc
cacaaactgatagccaaacagatcccggttgaggaaggtcacccttacccgcttagtccg
gcggctatggcagctaaaataaacgaagcaccaaaaaaaggtggttcaggcagcggccaa
cgaggaggtggcggtggccgtggaggtaaccgcagatctggtggtagcggcaacagccgt
tcagccggaaataaccgttctggtggcaataaaaaaccaggcggtaaccgctcagaagca
tctaaacccggcggaaaaagcggcatgagcggagcgagaaaaggttaa
DBGET
integrated database retrieval system
