Mauremys reevesii (Reeves's turtle): 120369627
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Entry
120369627 CDS
T07797
Symbol
PCDH12
Name
(RefSeq) protocadherin-12 isoform X1
KO
K16499
protocadherin delta 2
Organism
mrv
Mauremys reevesii (Reeves's turtle)
Brite
KEGG Orthology (KO) [BR:
mrv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
mrv04515
]
120369627 (PCDH12)
Cell adhesion molecules [BR:
mrv04515
]
Cadherins
Protocadherins
120369627 (PCDH12)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
DUF1980
Motif
Other DBs
NCBI-GeneID:
120369627
NCBI-ProteinID:
XP_039339046
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Position
LG8:complement(39852304..39900380)
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AA seq
1150 aa
AA seq
DB search
MLLLSHFLLQFLVLCWHFFLCIDCQEVSPFAMQYKVLEEVPSGTVIGKLSEDFGWEERSE
PVETFQQLHFPKELPVRVGSGDGLLSTSGRLDRERLCRHNDPCLFSFDVLAAIHLALIHV
EIQVLDINDHAPQFPKPELELEISESASLRTRIPLDRALDPDAGSNALCSYSLSPSDHFA
LDVISGSDGTKHAELVVVKEVDRELHSCFDLVLTAFDHGESPKSGTTLLRVIVLDSNDNS
PMFAESSLTVEIWEDALPGTILINLTATDPDQGPNGEIEYSLSKHASLEVLNMFSIEAKT
GSVVLRRPLDYEENHTYEVDVQARDLGANPIPAHCKILIKVLDVNDNAPDVHITWAAQVP
VLSEALPKDSFVALVTVSDPDSGNNGQVHCYLSQGLEHFKLKRTNRYTYMLLTNAILDRE
RWAEYNLMLMVQDNGNRSLAVRKHLTICISDVNDNPPLFERITYDVTIAENNVPPSYLIT
VKAHDADLDFNGKVSYSIQDFFVSDLVSIDSKTGEIFALRAFDYEQMTSLEFLVTAEDGG
HPKLVSNVSVRVSLLDRNDNSPVIVQPVLVGGKARIIVLVNAQTGCLWLSLGNDSPQGTA
ITTMTPTLSSNVSLLFTIAARDADSGMNGALQYDILSGNDTSLFLIDSLSGQVFINSSNA
SSLIGSEWEMEVLVRDQGNSPLHAKALVQLSFRNHLDQLTNSAQEAQMLNPSMVTVICLA
VLLGTFLLILALIVSICKREKKDNMAYNCREAEHAHRHQQLKKPHKHIQKTDIYLVPVLR
NRQAVQSETEQVLSCEEALLKESAWDDPLQTSFHLTPTLYRTLRNQKGPAEQKDAFNLPA
IQCRPFHPHRLRNASKESSSLQDAQTHSKSLENPQLELLGDQNCDLSLPTIHPSDMTLKR
QRIAEPDVRPREAHPHQHLLRSLVRLSMVALAEQDPMGELAMESPPVQQISQLLSLLHQG
QFQPKPNHRGNKYTAKNGSRSAGLDADCFTIKDSGQGESEADDGDSENGLNLSIDQLVGE
ELESLLEPHAGLALERLTADPAWMARLSLSLTSSYKDNVFSPASLHSSQDQEDAGQDKPR
TFETFGKVTGSDPNAARTRLASTFLSEMSTLFEMILSQKAQAHSATASGFLQQLSAHSKP
FGMDGDAPAV
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgcttttattgtcacactttctgcttcaattcttggtgttgtgctggcactttttcctt
tgtatcgattgccaggaggtgtccccctttgctatgcaatacaaagtgttagaagaagtg
ccaagtggaacggtgatagggaaattatctgaggattttggctgggaagagagaagtgaa
ccagtagagaccttccagcagctgcatttccccaaggagctccctgtccgcgttgggtct
ggagatggtttgcttagcacatcagggcggttggacagagagcggttatgcaggcacaat
gatccatgcttgttctcttttgatgttctggctgccatacacttggctttaatccacgtg
gagattcaggtcttggacatcaatgatcatgcaccccaatttcctaaacctgagctggaa
ctagaaatatcagagagtgcatctttacgaacacggatcccactggacagagctcttgac
ccagatgctggctccaatgccctctgctcttactcattatcacccagtgaccactttgct
ttggatgtaatttctggatctgatgggactaaacatgcagaacttgtagttgttaaagaa
gtggacagagagctccactcttgttttgatctagtattgactgcctttgatcatggagaa
tcaccaaaatcaggcacaaccttacttagggtaattgttttagactccaatgataacagc
cctatgtttgcagagagttctttgacagtggaaatctgggaagatgctttgcctgggaca
attcttataaaccttacagccactgaccctgatcaaggtcccaatggggagatagaatac
tcactcagtaaacatgcttcactggaggtgttgaacatgttcagcattgaagccaagaca
ggcagtgtagttctgagacgcccactggactatgaagaaaaccatacctatgaagtagat
gtgcaagccagggatcttggagccaaccctatcccagcacactgcaagatcctcatcaag
gtcctggatgtcaacgacaatgccccagatgtgcacatcacttgggctgcccaggtgcca
gtgctatctgaagctcttcctaaggacagctttgttgctctggtgacagtaagtgatccc
gattctggaaacaatggtcaggtgcattgttatcttagtcaaggacttgagcatttcaaa
ttgaaaagaaccaacagatacacttatatgctgttgaccaatgccattttggacagggag
aggtgggcagaatataacctgatgttaatggtccaggacaatgggaatcgctccttagct
gtgaggaaacacctcactatatgcatcagcgatgtcaatgacaacccaccattgtttgaa
agaattacatatgatgtcaccattgctgagaacaatgtgcctccatcctacctgattact
gtcaaggctcacgatgctgacttagattttaatggaaaggtcagttatagcatccaggat
ttctttgtttcagacttggtctctattgattcaaaaactggtgaaatctttgcgctcaga
gcttttgattatgaacaaatgacaagtctggaattcctggtgacagcagaagatgggggt
caccccaaacttgtgtcaaatgtttctgttagggttagtctgcttgataggaatgataat
tcccctgtgattgtgcagccagtgctggtgggaggcaaagcaaggatcattgttctagtc
aatgcacagaccggatgcctgtggctatctttagggaacgacagcccccaaggtacagca
ataaccaccatgacaccaacactgagttcaaacgtttccctgctattcaccatagctgcc
agggatgcagattctggcatgaatggggccctccagtatgatattctgagtgggaatgat
accagtttgtttctcattgattcactgtcagggcaggtgtttatcaacagcagcaatgcc
agcagcctcattggcagtgaatgggaaatggaggtgttggtaagggatcaagggaactca
ccgctgcatgcaaaagcccttgtgcagttaagtttcagaaatcatcttgaccagctgaca
aactcagcccaggaggctcagatgctgaacccatccatggtgactgttatctgcctagct
gtgctattaggcacttttcttcttattttggctttaatcgtgtctatatgcaaaagagag
aagaaagataacatggcctacaactgcagggaagcagaacatgcccacagacatcagcag
ctcaagaagccccacaaacacattcagaaaacagacatatatttagtccctgtactcaga
aacaggcaagctgtgcagagtgagactgagcaagttctgtcctgtgaagaagctttgctg
aaggaaagtgcctgggatgacccactgcagacttcatttcatttaaccccaacactgtac
aggacccttagaaatcagaaaggtccagctgaacagaaagatgccttcaatctccctgca
atacagtgcagacccttccacccacacaggctaagaaatgcatcaaaagagagctcaagc
cttcaagatgcacaaacccattccaaaagcttagagaacccacagctggagcttttggga
gatcagaattgtgacctctcactgccaactattcatccctcagacatgactctgaagaga
cagagaattgctgagccagatgtgaggcccagggaagcccatccccaccagcacctcctg
agaagcctagtgaggctgtccatggtggcacttgcagaacaggaccccatgggagaactt
gctatggagtcacctcctgttcagcaaatctctcagctgctgtctctgctgcaccaaggc
cagttccagcccaaaccaaatcacaggggaaacaaatacacagccaagaatggcagcagg
agtgcagggctggatgctgattgcttcactataaaggacagtggtcaaggagagagtgag
gcagatgacggggattcagaaaatggactcaatctttccatagaccagctggtgggagaa
gaactcgagagccttctagagccccatgcagggctggccctggagaggttgacggcagac
cctgcatggatggctcggctctccctgtccctcaccagcagctacaaggacaatgttttc
tcccctgcttctctgcactcttctcaggaccaggaagatgcagggcaggataaaccaaga
acctttgagacatttggcaaagttactggatctgacccaaatgcagccaggacgagactg
gccagcactttcctctccgagatgagcaccctatttgaaatgatcttatcccagaaagca
caggcccattcagcaacggcctcaggattcctgcagcagctctctgcgcatagcaagccc
tttgggatggacggcgatgctcctgctgtgtag
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