Mauremys reevesii (Reeves's turtle): 120370014
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Entry
120370014 CDS
T07797
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
mrv
Mauremys reevesii (Reeves's turtle)
Pathway
mrv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mrv00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120370014 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mrv00536
]
120370014 (COL11A1)
Glycosaminoglycan binding proteins [BR:
mrv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120370014 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
120370014
NCBI-ProteinID:
XP_039339923
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Position
LG8
Genome browser
AA seq
1864 aa
AA seq
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MEMQRWSTRWKTKRWLRDSTVTTLITFTFLLQAAGVRGAEPVDVLKALEFHKSPEGISRT
TGFCTNRRDSKGSDVAYRVSKHAQISAPTKQLYPGGNFPQDFSILITVKPKKGIQSFLLS
IYNEQGIQQIGVEVGRSPVFLFEDQYGKPVPEDYPLFRTVNIADGKWHRVAISVKKKSVT
MIVDCKEKTTKALNRNDRAIVDANGITVFGTRILDEEVFEGDIQQLLIVADPRAAYDYCE
HYSPICDSPVPNAPQAQEPQVDEYATEDLIEYDYEYGEADYKESDTVTEGPPQFEETITQ
TEKKKAKAPKKKRTVATNSKNKPTKATTKKSEHFASKKKKSYQAAAKGKLGANIVDEFQE
EYSVTETDYGVSEGSQTEAPRHTTEANEHNPVEEVFAEEYLTGEDYDTEHKKNEDTEYGS
RGVDLSESDLLVDGELGEYDFYEYKEYEEKPTNPTNEEFGPGVPAETDITETSVTGHGAY
GEKGQKGEPAVVEPGMLVEGPAGPAGPPGLTGPPGLQGATGPPGDPGERGPSGRPGLPGA
DGLPGPPGTMLMLPFRFGGDGEKGPTISAQEAQAQAILQQARIAMRGPPGPMGLTGRPGP
VGGPGSQGIKGESGDPGPQGPRGIQGSIGPSGKPGKRGRPGADGARGMPGEPGSKGDRGF
DGLPGLPGDKGHRGDRGPQGPPGAPGEDGTRGEDGEVGPRGLPGEAGPRGLLGPRGTPGP
PGQPGVAGVDGPPGPKGNLGPQGEPGPPGQQGIPGPQGLPGPQGPIGAPGEKGPQGKPGL
PGLAGSDGPSGHPGKEGQSGEKGALGPSGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGE
DGFPGFKGDMGLKGDRGEVGPLGPRGEDGPEGPKGRAGPTGDPGGAGQAGEKGKLGVPGL
PGYPGRQGPKGSTGFPGFPGANGEKGARGLHGKPGPRGQRGPTGPRGSRGPRGPTGKPGP
KGTAGSDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGP
PGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGP
PGLRGFPGERGLPGAQGPAGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGP
PGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPGGSPGEDGDKGEIGEPGQKGSKGD
KGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFPGPPGPIGLQGL
PGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGDKGEPGEAGN
PGPPGESGPGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGE
PGPAGQDGTGGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGE
PGSEGAPGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGASGQDGPPGPMGPPGLPGL
KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGALGTKGDTGIPGSAGPLGPPGP
PGLPGPQGPKGSKGSTGPGGQKGDGGLPGPPGPPGPPGEVIQPLPIQSPKKTRRSPDYML
ADAADNILDYSDGMEEIFGSLNSLKQDIEHMKYPMGTQNNPARTCKDLQLCHPDFPDGEY
WIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKENPGAWFSEFKRGKLLS
YVDVEGNSINMVQMTFLKLLSASARQNFTYNCHQSVAWHDGSSDSYDKALRFLGSNDEEM
SYDNNPYIKALHDGCASRKGYAKTVIEISTPKIDQVPIVDVMINDFGDQNQKFGFEVGPV
CFLG
NT seq
5595 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcagagatggtccacaaggtggaaaacgaaaaggtggctccgggactccact
gtaaccacactcatcacttttactttccttctccaggctgcaggggtcagaggagctgaa
ccagttgatgtgctaaaagcattagaatttcacaagtcaccagaaggaatatctagaaca
acaggattttgcacaaacagaagagattcaaaaggatcagatgttgcctacagagtttca
aaacatgcacaaatcagtgccccaacaaagcaactgtacccaggtggaaactttcctcaa
gacttttcaatattaattacagtgaaacctaaaaaggggatccagtccttccttttatct
atctacaatgaacagggtattcagcaaataggtgtggaagttggtagatcccctgtcttc
ctgtttgaagatcagtatggaaaacctgtcccagaagattatcctctttttaggacagtc
aacattgctgatggaaagtggcatcgggtagctatcagtgtgaagaagaaaagtgttacc
atgattgttgactgtaaagagaaaaccacaaaagcactcaacaggaatgacagagcaatt
gttgacgccaacggcattaccgtctttggaaccaggattctagatgaagaagtttttgag
ggtgatatccagcagctattgattgtagctgatcccagagcagcgtatgactattgtgaa
cattatagcccaatctgtgattcccctgtccccaatgcgcctcaagctcaagaacctcaa
gttgatgagtacgcaactgaagatttaatcgaatatgactatgagtatggggaagcagat
tataaagagtctgacacggtaacagagggacccccacaattcgaggagacaataacacaa
acagagaaaaagaaagccaaagccccaaagaagaagaggacagtggccaccaactcaaag
aacaaacccacaaaggccacaacaaaaaaatctgaacattttgcatccaagaagaagaaa
agttaccaggcagcagcaaaaggcaaactaggggccaatattgttgatgaatttcaagaa
gagtatagcgtgactgaaactgactatggggtttcagagggttcccagactgaggctccc
aggcacacaactgaagctaatgagcataatcctgttgaagaagtatttgctgaagaatac
ctaactggagaggattatgatacagaacataaaaaaaatgaggatactgaatatggaagc
agaggagtagacctcagtgaatctgatcttctggtagatggagaattaggcgaatatgat
ttttatgaatataaagaatatgaagagaaaccaaccaatcccactaacgaggagtttggt
cctggtgttccagcagagactgatatcacagaaacaagcgtgactgggcatggtgcttat
ggagaaaaaggacagaagggagaaccagctgtggtcgaacctgggatgcttgttgaagga
ccagcgggaccagcaggacctccaggtcttacaggtcccccaggtttacagggtgccact
ggtcctccaggtgaccctggtgagaggggtccatcagggcgtcctggccttccaggtgct
gatggtttacctggtcccccaggtaccatgttgatgttgccgttccgctttggtggagat
ggtgagaagggcccaacaatctcagctcaagaagctcaagcccaagctattcttcagcag
gcgaggatcgctatgagagggccacctggccccatgggactcactggaagaccaggtcct
gtgggcgggcctggctcacaaggtattaaaggagaaagtggcgacccaggtccccagggt
cctcgaggtattcaaggttccattggtccaagtgggaaacctggcaaaagaggtcgtcca
ggagctgatggcgctagaggaatgccaggagaacctggttcaaagggtgatagagggttt
gatggtcttcctggtctacctggtgataaaggtcacaggggagatcgtggcccacaagga
cctcctggtgcacccggtgaagacggaacaagaggagaagatggagaagttggacccaga
ggtctcccaggtgaagctggtccaagaggactactgggccccaggggcacacccggcccc
ccaggacaacctggtgttgcaggtgttgatggccccccaggtccaaaaggaaacttgggt
cctcaaggggaaccaggacctcctggtcaacaaggaatcccaggtccacaagggcttcct
ggtccacaaggtcctattggagctcctggtgaaaaaggaccacagggcaagcctggccta
ccgggacttgctggttctgatgggccttctggtcatcctggcaaagaaggtcagtctgga
gagaaaggtgctttggggccttcaggtcctcagggtccaattggctatcctggtcctcgt
ggtgtgaagggagctgatggtgtccgtggtctcaagggctccaaaggtgaaaagggtgaa
gatggtttcccaggatttaaaggtgacatgggtcttaaaggtgacagaggtgaagttggt
ccactgggtccacgaggagaagatggccctgaaggtccaaaaggtcgagcaggtccaaca
ggggacccaggtggtgctgggcaggctggtgaaaagggtaaacttggggttccaggactg
ccaggatatccaggaagacaaggtccaaagggctccactggattcccaggattcccaggt
gccaatggagagaaaggtgcaaggggtttacatggaaaaccaggtcccaggggacagcga
ggaccaacgggtccacggggatcaagaggcccacgaggtcccacaggaaaaccaggccct
aagggtactgcaggcagtgatggccctcctggcccaccaggtgaaaggggaccacaaggg
cctcaaggacctgttggattccctggaccaaaaggacctcctgggccacctgggaaagat
ggcttgccggggcacccaggacagcggggtgagactggttttcaaggcaaaactggaccc
ccaggccctggtggtgttgttggaccccagggtcctactggtgagactggcccaattggt
gaaagaggtcaccctggtcctccaggcccaccaggcgaacaaggcctcccaggcgctgca
ggaaaagaaggtgctaagggtgacccaggccctcaaggtatctctggaaaagacggacca
ccgggtcttcgtggtttcccaggagaaagaggccttccaggagctcagggtccagctggt
ctgaaaggaggagaaggcccacaaggcccacctggccccgttggttctccaggtgaacgt
ggatcagcaggaactgctggccctattggtctaccgggccgtccaggtcctcaaggtcct
ccaggcccagcaggagagaagggtgctcctggtgaaaaaggtcctcaaggtccagctgga
cgagatggagtacagggtcctgtaggtcttccaggtcctgctggtcctggtggttctcct
ggagaagatggtgacaagggtgaaattggtgaaccaggtcagaaaggcagtaagggtgac
aagggagaaaatggtcctccgggtccaccaggtcttcaaggtcctgttggtgcccctggt
atagctggaggtgatggagagccaggcccaagaggtcagcaaggaatgtttgggcagaaa
ggtgatgaaggtccacgaggattccctggtcctccaggtcccattggtcttcagggtttg
cctggccctccaggtgaaaagggtgagaacggtgatgttggtccaatgggtccacctggt
cctccaggtccaagaggtccccagggtcctaatggagctgatggtcctcaaggtccccca
ggctctattggctctgttggaggtgttggtgacaagggtgagcctggggaagctggtaac
cctggacctcctggagaatctggcccaggcggaccaaaaggtgaaaggggagaaaaaggt
gaggctggtccacctggagctgctggacctccaggtgccaaaggacctccaggtgatgat
gggcctaagggtaatccaggccctgttggtttccccggagatcctggtccccctggtgaa
cctggccctgctggtcaagatggtactggtggggagaaaggagaagatggtgatcctggt
caacctggtccaccaggtccttcaggggaagctggcccacctggtcctcctgggaagaga
ggccctcctggagcagctggtgctgagggcagacaaggtgaaaaaggtgcaaagggtgaa
cctgggtcagaaggtgcacctggaaaaacaggaccagttggtcctcagggaccttcagga
aaacctggtccagagggtctccgtggtattcctggccctgtgggagaacaaggtctacct
ggagcatcaggtcaggatggaccacctggtcctatgggtccacctggcttgcctggactg
aagggggatccaggttccaagggtgagaagggacatcccggtctgattggtctgattgga
cctccaggagaacagggtgaaaagggtgacaggggtcttccaggtccacaaggagctctt
ggaaccaagggcgatacaggcattcccggttctgctggtccactcggcccccctggccct
cctggtttacctggtcctcaaggtccaaagggttccaaaggatccactggtcctggtggt
caaaagggtgatggtggtttacctggccccccgggtcctcccggtcctcctggggaagtt
atccagcctttgccaatccagtcacccaaaaagacaagaagatctccggattacatgctg
gctgatgcagctgataacatcctggattattctgatggcatggaggaaatatttggttca
ctcaattctctgaagcaagatattgaacatatgaagtatccaatgggcactcagaacaac
ccagcccgaacttgcaaagatctacagctctgccacccagacttcccagacggtgaatat
tggattgatcctaatcagggctgctctggagactccttcaaagtgtactgtaatttcaca
gcgggtggcgaaacttgcatctacccagataagaaatctgaaggagtaagaatttcatca
tggccaaaggagaatccaggagcctggtttagtgaatttaagagaggcaaactgctttcc
tatgtggatgttgaaggcaattccattaatatggttcaaatgacgttccttaaactactg
agtgcctctgccagacaaaatttcacttacaactgtcatcagtcagtagcttggcatgat
gggtcatctgacagctatgacaaagcactgaggttcttaggatcaaatgacgaagagatg
tcttatgacaacaatccttacatcaaagctcttcatgatggctgtgcatcacgaaaaggc
tatgcaaagactgtgatcgaaatcagtacgcctaaaatagaccaagtgcctattgttgat
gtgatgattaatgactttggtgatcagaaccagaagtttggattcgaagttggtcctgtc
tgtttcctcggttaa
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