Mauremys reevesii (Reeves's turtle): 120371964
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Entry
120371964 CDS
T07797
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
mrv
Mauremys reevesii (Reeves's turtle)
Pathway
mrv04510
Focal adhesion
mrv04512
ECM-receptor interaction
mrv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mrv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120371964 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120371964 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120371964 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mrv04147
]
120371964 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
mrv00536
]
120371964 (COL4A5)
Exosome [BR:
mrv04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120371964 (COL4A5)
Glycosaminoglycan binding proteins [BR:
mrv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120371964 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120371964
NCBI-ProteinID:
XP_039344427
LinkDB
All DBs
Position
LG9:complement(86455004..86590072)
Genome browser
AA seq
1690 aa
AA seq
DB search
MKLRGRRRRLAAAACLVLLGLWGLSAEAAACHGCTSGSKCDCSGVKGEKGERGFPGLEGQ
PGLPGFPGPEGPPGPRGVKGDDGFPGPTGPKGIRGPPGLPGFPGTPGLPGLPGQDGSPGL
QGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGLPGMKGDPGEIILSSLPGQKGEPGFPGL
PGLQGPPGPLGAQGPIGPPGPPGLTGPPGPKGLPGPKGNMGLNFQGPKGEKGDQGLQGPP
GPPGQIGEQKRPNDVEFQKGDQGIPGERGPPGPPGPVGPPGPPGGMKGEKGEQGEPGKRG
KPGKDGDPGQPGRDGLPGEPGLNGVPGRDGEKGLKGERGLPGPPGVIMGNGAEVGPKGSK
GLPGFPGPKGERGYPGSAGSPGLPGPPGISGIGPPGPPGLPGERGQKGIQGLPGASRPGQ
PGLDGQPGPPGPPGAPGPPGTTIPPSDRVCQRGPPGFPGPPGDKGFMGERGQKGDKGETC
FNCIGTGISGPPGDRGPPGPPGSPGSPGFPGPKGEKGLTGLTGLMGSPGFPGPPGPPGLP
GSKGDPGDSLAFPGLKGDKGDTGFPGPPGIPGIDGSPGREGLPGLPGPKGEPGGVAFKGR
MGPPGDPGVQGLPGDRGPMGPPGFGPQGPPGEKGIQGVSGRPGPPGVPGPKGEPGKTITE
PGVPGSPGPPGRNGEVGLPGDPGLPGQPGLPGISGPKGDPGIPGIGLPGPPGLKGFPGMA
GPPGAPGAPGRPGLEGPPGQSGFPGQKGDPGFGVPGPPGPPGPPGFKGAQGLKGDPGFPG
NPGLPGRPGSDGIPGPKGDPGPSGPPGLAGPPGFPGIGGQGPPGQPGPPGPMGPPGPPGL
QGVPGEKGDPGPPGFDIPGPPGDRGRPGFPGTPGLIGPPGSPGPPGRDGISGFPGAKGEM
GVIGAPGPQGPTGTPGRDGLPGPKGSDGLPGQPGPTGLAGQKGVKGETGLPGPPGQVDPS
KLGSKGEKGEPGIPGIPGVSGQKGYQGLQGDPGPPGFNGQPGAPGLPGPKGEPGLPGQSG
LAGPPGQKGAMGETGLPGVPGIKGSQGTAGRPGQPGPPGFPGLKGEKGNPGLSDIGIPGP
KGDTGFPGYPGNPGSKGTPGNPGLAGLPGNPGAKGEAGLPGFPGTPGIPGPKGIDGPPGN
PGLPGSPGPPGGDGRPGPPGLPGEKGQPGRDGIPGPAGQKGEPGQPGFGRPGPPGLPGLS
GQKGEMGLPGPPGSPGLTGLKGERGFQGFPGLQGPQGPPGLPGPPMEGPKGSPGPQGVPG
RTGPSGPPGLPGPEGPRGPPGNGGFKGEKGNPGQPGQPGLPGLKGDQGQPGRQGDPGRPG
LNGMKGDPGVPGVPGFPGMKGPIGPPGAIGFKGDQGLSGPPGPPGLPGPAGKTIVVKGDL
GPPGPPGQPGLKGPPGLSGPPGLPGPIGLPGDPGRDGLPGFDGPGGRKGERGLPGQPGFQ
GTQGPPGPDGLQGPPGPPGTASVAHGFLITRHSQTTDTPLCPQRTIRIYDGFSLLYVQGN
ERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPKPMPMSMEPLTGQ
SIQPFISRCAVCEAPAMVIAVHSQTIQIPSCPQGWDSLWIGYSFMMHTSAGAEGSGQALA
SPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEISEMFSKPQSETLKAGDLRTRI
SRCQVCMKRT
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcggggccgccgccgccgcctggctgctgccgcctgcctggtgctgctgggg
ctctgggggctgagcgcggaggctgcggcttgccatggatgtacatcaggatccaaatgt
gactgtagtggagtaaaaggcgaaaagggcgagagggggttcccagggttagaaggtcag
cccggtttacctgggtttccgggaccagagggacctcctggcccaagaggcgtaaagggt
gatgatggttttccagggcctaccggacccaaaggaatcagaggtcctccaggtctgcca
ggatttccaggaacaccaggacttcctgggttaccagggcaggatgggtcaccaggactt
caaggtatccccggatgcaatggaacaaagggggaacgtggattcccaggcagtccaggt
tttccaggtttacaaggtcctcctggacctcctggcctaccaggtatgaagggtgatccg
ggtgaaataattttgtcatcactgccaggccagaaaggtgagccaggatttccaggactt
ccagggttacaaggcccacctggtcccttgggcgcacaaggtcctattggtccccctggg
ccaccaggtttaacgggacctcctggtccaaaagggcttccagggcctaagggtaatatg
ggtttgaacttccaaggacccaagggtgaaaaaggtgaccaaggccttcagggacctcca
gggccaccaggacaaattggggagcagaagagaccaaatgacgtagagtttcagaaagga
gatcagggtattccaggagaacgaggtccaccaggaccccctgggccagtaggtcctcca
ggtcctccaggtggcatgaaaggtgaaaaaggtgagcaaggagagccaggcaaaagaggg
aaacccggcaaagatggagatcctggccagcccggtagggatggtttacctggcgagcct
ggtttaaatggtgttccaggaagagatggtgaaaagggtctgaaaggtgaacgtggtctg
cctggtcctcctggagttatcatgggaaatggtgcagaagtgggaccaaaagggagcaaa
ggacttccaggatttccaggacccaaaggcgagcgtggatatcctggctcggcagggtct
cccggcttgccagggcctccagggatttcaggtataggcccacctggtccacctggtttg
cctggggagcgaggacagaagggtattcaaggtctacccggagcttccagacctggacag
cctggacttgatggacaaccagggccacctggaccaccaggtgcccctggacctcccgga
acaactatccctcctagtgacagagtatgtcagcgagggcccccaggttttccaggacct
ccaggagacaaaggttttatgggggagcgaggccagaaaggtgataagggagagacgtgt
tttaattgtataggaactggcatttctgggcctcctggggacaggggaccacccggacct
ccaggtagcccaggatctcctggtttcccgggtccgaaaggtgaaaaagggctaactggc
ttaaccgggctgatggggtcaccaggatttccaggacctccaggtccccctgggcttcct
ggttctaaaggcgaccccggggacagcctagctttcccaggactgaaaggtgataaaggg
gacactggtttcccaggacctcctggtattcctggcatagatggctctcctggacgagaa
ggactgccaggtcttcctggacccaagggggaacctggtggtgttgctttcaaaggaaga
atgggacctccaggtgatccaggagtgcaaggtcttcctggagacagaggacctatggga
cctcctggttttggcccacaaggtcctccaggtgaaaaaggcattcagggtgtatccggt
cgtccgggtcccccaggagttccaggtccgaaaggtgaacctggcaaaactattacagaa
ccaggagttccaggctcccctggacctccaggaagaaatggtgaagtaggacttccaggt
gatcctggtctgccaggtcagccgggcttgccaggcatctcaggtcctaagggtgatcca
ggtatacctggcattggacttccaggcccaccaggcctaaaaggtttcccaggaatggct
ggccccccaggagcaccaggagcccctggacgaccagggctcgaagggccaccaggacaa
tctggtttcccaggacaaaagggggaccctggatttggtgtcccgggaccacctgggcca
ccagggccaccgggttttaaaggagctcagggactgaaaggtgatcctggcttcccagga
aaccctggtttgccagggcggccaggttcagatggaattcctgggccaaaaggtgaccct
ggaccaagcggaccaccggggttagcgggacccccagggttcccgggaattggtggtcaa
ggtccaccgggacaacctggccctccaggacctatgggcccaccaggtccaccaggatta
caaggagttccaggtgagaaaggagatcctggccctcctggattcgacatccctggtcca
cctggtgacagaggcaggccaggatttccaggaacaccaggtctcattggacctccaggt
tcaccaggaccaccaggacgagatggaatatcaggatttccaggtgccaaaggtgagatg
ggtgtgataggagcgccgggtccacaaggtcctactggaactcctggcagagatggcctt
cctggtcctaaaggcagtgatggtttaccaggtcagccaggacctactggactggcaggg
cagaaaggcgtgaaaggtgaaacaggcctgccaggtccccctggacaagttgatccaagc
aagctgggatcaaaaggagagaaaggcgagccaggcattccaggtattcctggagtatca
ggccagaaaggttatcaaggtctccaaggtgacccagggccacctggattcaatgggcaa
ccaggtgcaccaggattgccaggccccaagggagagccagggcttcctgggcagtcagga
ctagcaggacctccaggacaaaaaggtgccatgggagagacggggcttccaggtgtccca
ggtattaaaggctctcaaggcacagcaggacgtcctggccagcctggccctccaggattt
ccaggattaaagggagagaaaggcaacccaggtctttcagatattggaatccctggccct
aagggtgacactggtttccctggatacccaggtaaccctggcagcaaaggtacacctgga
aatcctggtttggctggattaccaggtaatccaggtgcaaaaggagaagcaggccttcct
ggattcccagggacaccaggaattccaggaccaaaaggtattgatggacccccaggtaat
cctggtctccctggatcacctgggccaccaggtggtgatggccgtcctggccccccgggt
cttccaggggagaaagggcagccaggtcgggatggtattcctggaccagctggacagaag
ggtgaaccaggtcaaccaggttttgggcgcccaggacctcctggactcccaggattatca
gggcaaaagggtgagatgggattacctggccctccaggatccccaggacttacaggtttg
aagggtgaaagaggtttccagggattccccggtctacaaggtccacaaggtccgcccggc
ctgcctgggccacctatggaaggtcctaaaggtagtcctggtccacaaggtgtacctggg
agaacaggtccttcaggtcctccaggtctgccagggccagaaggtccacggggtccccct
ggaaatggaggatttaaaggagaaaaaggaaacccaggtcagccaggccagcccggcctc
cctggtctaaaaggagatcaaggacaacctggacgccagggtgatcctggtcgtcccggc
ctgaatggaatgaaaggtgatcctggggttccaggtgttccaggatttccaggtatgaag
ggtcccattgggcctccaggagcaattggttttaaaggtgatcaaggtctgtcaggtcca
ccaggtccaccaggcttacctggccctgctggaaaaaccattgtagtaaaaggtgacctg
ggtcctccaggtccaccaggccagcctggattgaaagggccacctggattgtcaggccca
ccaggtttgccaggtccaataggccttcctggggatcctgggcgagatggacttcctgga
tttgatggtccaggaggacgcaaaggcgagagaggacttccaggccaaccaggctttcaa
ggtacgcagggaccccctggtcctgatggcttgcaaggcccaccaggtcctcctggaaca
gcttctgttgctcatggattccttataactcgacacagccagactacagacacaccattg
tgcccacaaagaacaataaggatatacgatggattttctcttctatacgtgcagggaaat
gagagagcccatggccaggacttaggtactgctgggagctgtctccgacgtttcagcacc
atgcccttcatgttctgtaacatcaacaatgtgtgtaattttgcatcaagaaatgattat
tcctattggctgtccactccaaaaccaatgccaatgagcatggagccactgactgggcag
agcattcagccattcattagccgatgtgccgtgtgtgaagctcctgccatggttatagca
gtccatagtcagaccattcaaattccatcatgtccgcaaggttgggactctctttggatt
ggttattctttcatgatgcacactagtgctggtgcagagggctctggacaggccttggca
tcccccggttcctgtttagaagaattccgctcagctccttttattgagtgtcatggtcgt
ggtacttgtaattactacgctaattcatacagtttctggctggcaactgtagagatatca
gaaatgtttagtaaacctcagtcagagacactgaaagctggagacctgaggacacgtatt
agtcgttgtcaagtttgtatgaagaggacgtaa
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